RNA id: XM_036974456.1


Basic Information

Item Value
RNA id XM_036974456.1
length 2327
RNA type mRNA
GC content 0.44
exon number 13
gene id lnpa
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50084100 ~ 50099697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTTTGCGTGTCTTCTGACGTCAGAAATGGGCCGCGCATGTTCTTCCGCTCCTAATATATAAGCAACAATATAGTGGTAATTGTGTTTCAGTCACAGATGAACTTCGGACATTAATACTGTCCAGGTGAAGAGATTCCACTGGAAAATCAGAGGGCTCTAAAAAGACTGACTTCATTTTGTCCTCAACATGGGGGTTGTAATATCCCGGTTTAGGACTAAGCCATCAACTGTAGAGGTTTTGGAAGGAATTGATAAGGATATCCAGGCTTGTGAGGAATGTCAAGAACTGTATCAAAAACAGTTGAAGTTATGGGTGTGGAGACTGCTTCAGTACTCATCTCTTCTTTACCTGATGGCTAGCATAATTGTGTATCTTTGGTACCTCCCTGAACAGATGATTGGAAAGGTCATATTGGTCCTTCCTTTTGTTGTATTTCCACTATTTGTATGGCTCCTTCGAAAGGGGCTGCTCACTCTTTTTAAAAGAAGAACAGAAAAAAACAATGAAAAATTGGAGGACCTCAAATCACAAAAACGAAAAATGCTTCTAGAGGTGATGGAAACTGAAACATATAAAACCGCAAAAATTATTCTGGAGAGATTTGATCCTGATTCAAAGACAAAGGTGCCTGAATCCATTCCAAGTGGAACACCTATGACTCCAAAACCTGGCCAAGAACTCCGTCAGCGGAATGTCACTCCTCGGCCCCCGGTGGCGGTGACTCCTGCTGCAGCACGTCCTCTTCTGGCACCAGGGGCCACCCATGCAGGACCGCCCCTCCACTCAGCTCCTGGAGGACCCCCAGAGAGAATCCTGTCTGCTGAGGCTGCTCAGCAGAGCTTGATGAAGAGGCCCATGACCCCTGGCACACCTGTTCCAGGAGTGGGAATGCACCCTCCAGGCCCACCCTTGGCCAGACCTGTTCTCCCCCGGGATAGAGGCACCATGGACAGGGTCATTGAGTACTTTGTTGGCGATGGCCCTCAGAATAGATATGCCCTCATATGCCAGCAGTGTCTCACCCATAACGGCATGGCATTAAAAGAggaatttgaatatgttgCCTTCAGATGTGCATATTGTTATGTCCTGAATCCTGCGAGAAAGACCAGACCCCAAGCCCCCCGACTCTCTGAGGTCACTGCTGAGGCAAAGACGCCCTCACACGCACCCATACCAACATCACCAACACCTGTAGAACCAGCACCCGTAGAACCAGCACCTGCCCCTGAAGCTGATGAGAGCCCCGCTACTTCAGTTGCCGAGAAGCAGCCTACTCCCCCAGCTGAAGAGATCCAAGAGTTGGTGACTCTGACCACAGATACTGCCCCAGAAACAGAAGTGCCAGGAACTTCACAATCTCTGCAACTCACCCCAGTGAAGTCAGACGGGGAGCTGGATGTATCAGACATGGAGGTTGAATAGAATGTCATTTCAACACATTAATTTATGCTAGAACTATATTCTACTtttttcagggggggggggggggggggggggggggggggggttctttctGTTTTTAAAGTCAACTTAATAATGGTTAGATTAATGCTGTGAGGTAGAATGGCAGAATAACAGGCAACGGGTTTGGTATTAACTTAAAGGTATTTTCTTGTCAGTTGTCATGGTACCAATATGAATTTAATGATTGGAATAAAAGTGAACAGCCAACACTTGAGGTTTTACGTCATGTCCACGGTACTTTCATGAACTGTACTTTCACTTCTATACATTACTCAACAGCACACTTAGTTCAGCTAGCTAAGCGTTTAGCGTTGATGCACTTATAGTGTGTTTTCCATATGTGGGAAATTGCTTATCCGCTTTACTATTGTATTTGACTCGTCTCTATCCATGTAGTCTACAGACATGCAAGATGATGACAATAATGAGCAAAAATCTAGCTAAATAGTTTGAGTTTCTGCACATTTAGAATGAgggtttctttttttaaattaagtaatttgcaacattgttttagTAGTTTGTCTTTTGACTGAATGTCTTACAATGTCTACAGAAGTGCAAAAAATGTCCTGTCTGGTGTGATATGAAATATTTTTAGGGGGCAGATATTTATAGATACTATGGTATACGTTAGTGCCTTTTTAACAGTATTGACTAGGTTTTGGGTAGTCCTAGTACAATGGGACTAACCACGTTTACACAGTAATAGTACAGTCATAGTAGTACTTATTTATTGCTTAAGAGGAGAAATGAAGCTGTATTTGCTGTCCTCTGCACCTGAGTGCCTTGATGCGTTTTAtgtttccactttgaaatgaatAAAGACTTGAGTCAGTCAGAATGCATGCGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305296 lncRNA downstream 3414 50080483 ~ 50080686 (-) True G268702
TU305295 lncRNA downstream 5777 50078119 ~ 50078323 (-) True G268701
TU305294 lncRNA downstream 6113 50077784 ~ 50077987 (-) True G268700
TU305266 lncRNA downstream 37810 50045926 ~ 50046290 (-) True G268673
TU305138 lncRNA downstream 122887 49960915 ~ 49961213 (-) True G268560
TU305316 lncRNA upstream 9253 50108940 ~ 50109195 (-) True G268722
TU305512 lncRNA upstream 139361 50239048 ~ 50239267 (-) True G268885
TU305526 lncRNA upstream 148765 50248452 ~ 50251001 (-) True G268899
TU305554 lncRNA upstream 172420 50272107 ~ 50272358 (-) True G268927
TU305558 lncRNA upstream 174568 50274255 ~ 50274469 (-) True G268931
XM_021597203.2 mRNA downstream 102230 49979196 ~ 49981870 (-) True LOC110520125
XM_021597204.2 mRNA downstream 102285 49979196 ~ 49981815 (-) False LOC110520125
XM_021597198.2 mRNA downstream 105208 49962467 ~ 49978892 (-) True atf2
XM_036974452.1 mRNA downstream 105980 49962467 ~ 49978120 (-) False atf2
XM_021597200.2 mRNA downstream 105983 49962467 ~ 49978117 (-) False atf2
XM_036974459.1 mRNA upstream 19982 50119669 ~ 50124620 (-) True evx2
XM_021597223.2 mRNA upstream 225422 50325109 ~ 50332906 (-) True nfe2l2a
XM_021597227.2 mRNA upstream 278713 50378400 ~ 50436074 (-) False pde11a
XM_021597228.2 mRNA upstream 340514 50440201 ~ 50442930 (-) False LOC110520139
XM_021597239.2 mRNA upstream 420578 50520265 ~ 50525331 (-) True prkra
TU305117 other downstream 182562 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 212455 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 516626 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 518111 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 581129 49502416 ~ 49502971 (-) True LOC118944672
TU306341 other upstream 340518 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1028753 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1373637 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1497712 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1498248 51597935 ~ 51600230 (-) True il1rl1

Expression Profile