RNA id: XM_036974459.1


Basic Information

Item Value
RNA id XM_036974459.1
length 3908
RNA type mRNA
GC content 0.41
exon number 3
gene id evx2
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50119669 ~ 50124620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCCAAACCCAAGAGCAATCTTAAACAGACTCAGATCAACCCAGGGACACGCGCTCCActcctcacttctcctcttcctctccacttgGATATATATTCGTCTGACCGCAGGCCGCCTCCATCATCAACTGACAGCCTTCTCGTATTTATTTGCTTATAAACCTGTTACAATAAATGATCATTCGAGCAGCGTCACGCGCATCTTAACGACGAGCAGCAACCACTTTTTGATGAATGACATTTTGGGCTAGAAAGGATGCACGGGTCATTTTAAACAGTCATTCATTGCTCGCATTGGCATTCTTAATTTTTTTCCCCCGGTCTCGCTCATAAAAAGGTGTTATATTATTTAGAGACAGTTGCTGAGCTGAATGCGGATTAGCTCCGCCACAACTCATCGGAGCACCAGCCCTGGAAATTGTGTTTCTTTCTAGAAGGCTTAATGATGGAGAGGATAAGAAAAGAGATGATTCTGATGGAGAGAGGTCTGCACAGTCCGGTGCCTGGGAAAAGGCTCTCGAACCTGTCAGACTCCGCTGGAAATTCAGTGTTAGAGGCCCTCGAAAATTCTCAGCACAGTGGTCGCCTAAGCCCGAGAATAAGTTCCGCCTCGCTTCATGGAAGTCTCGGGGATATTCCAACCAAAGGCAAGTTCGAAATCGACAGTATTTTCGGTGCTCACCACAACAGCGAGAATACTTCTTCCGCGGAGATTTCATCCTCAGAAAGCAGAAAGAAAATTCACTTATACCCAGAAGTTTCTCAAGACTCAGATATGAACAGTGATGTGGAGGTGGGATGCCCATCGCATCGCTCTCCGAGCCAACACaaggaaaacaacaacaaagGATTTTCTGACAATAATTCTGGAGGCTCCAACACAAGTTCATCCTCCCTTTCCAATCATAACGGCAATGGAATGAGCTCAAACATGTCAAATGCCGAGACTAGACGGTACCGGACTGCGTTCACCAGAGAACAAATAGGAAGACTGGAGAAAGAGTTTTACAGGGAAAATTATGTCTCAAGACCCAGAAGATGTGAACTGGCCGCATCACTGAATCTACCTGAAACTACAATAAAGGTATGGTTCCAGAACAGGCGGATGAAGGATAAGAGGCAACGTTTGGCGATGTCTTGGCCCCATCCAGCAGATCCAAGCTTTTACACCTACATGATGACGCACGCGGCAGCCACCGGAAGTCTACCATACCCTTTCCATTCCCACATGCCTCTGCACTATTACCCGCACGTTGGTGTCACAGCAGCTGCCGCTGCCGCAGCTGCGTCTGGTGCTGCATCGTCACCTTTCGCTACCTCCATTCGCCCTCTCGATACTTTCCGTGCACTCTCCCATCCTTACTCACGCCCAGAGCTTCTCTGTGGCTTCAGGCACCCAGGACTTTATCAGTCACCCGCAGGCCTCAATAGCTCTGCGGCAGCATCAGCAGCAGCGGCAGCAGCAGCATGTGCAGCCGCGGTCAGCGCGCCATCAGCCACTGGCCCATGCTCGTGCCTCAGTTGTCACAGCAGCCAAGCGGCCAGTGCGCTAGGCTCCAGAAGTACCAACTCTGACTTCACCTGCACAGCATCTGGGCAAAGATCCGAGAGTGGATTTTTGCCGTATTCTGCAGCTGTCCTGAGCAAAACCTCGGTTCCATCACCAGATCAGAGAGAGGAATCTTCACTAAACAGATAACTCATCACTGGAACTTCAAAAACAAGTTCAGTTGCTCATGTTTTCATGCTCTGTGGTTAGTTTATACATCCATCTATGACTCCAATATTTGGGGGACAAATAACGGTAATTCCAAAACAATTAGGCTAACTTAATTAGCAAACacttaaatatttgtttttacaataaacaaAGATTTTCTAGGCACTAGGCTATtcggaaaaaaatacaaaatgttacATTCAACAGAAATATCATGTTAGACGTTTTAAACTTCCAAAAAGTGTAAACATTGGTAAGTGCTAAATTTACAATAATTGAAAGGACTATTTTGTTAGTGCAGTGGTGATGAAGCTTTATTTTTCTTCATTCACACCTGGATTCATGTGCCTTAAAACCTAGAAATAACTATCTAATTCAGTGATAGGCCCACGGTACTTGGTTATTAATTCGGCCCACGGTACTTGGCTATTAATTCGGCTTATCACATCGACTGTGATTGACTAACTAATGTTTATTGTTCGTCACTAATTAAAACAATAGTTATTTTCATTTGACATTTTTTGATTCGTAGGCTAATCATAATTTCAAATGAATGTCAATGAACACAAACGTATCTAAATCAAGCCACATCCTAAATTCGTTATTTATCAATTTATGTCAATATATTTTCCCCAAGTAGGCGATCTAAATTCTAATAATAGCCTATACATTTTTCAAAATACCCAGTTATATCTTGGTATTAAGGCACTAAAAGTAACCATTGTTTCTTGTCGTCTGCATTTATCAAATAGATGCTGGGCATTGCTTTTCTCTGTTAATAAATATGTTTCCGTGTAGTCTCGTTCTTAATGTAGGTTATGGtgagaatcatatttacaatatgTGCCACAACAACTGATACTACTGTATAATGACCTTATTGTAAAACCGGTACAACTCAAGGGACATTCCTAATCTTCAAGTAAGGTGCATAGAATTTTGCACCTCTTCTATGCTGTCAATTCTGATGTTAATAATGAGAGGATTATGACGAAAATTGCCAATCATGTACCTTGATGGACCTCCATTGAATGCAGAATTGTAAGAAAGTTCCTCGTTCTGAGACCCGCTGTCAAGTGCTAACAACCCGCTGAGGGAAGTCATTAGACAAGACAGATAAAAGACCTGGAACATAGAACGTTGTTCTTGGTGCATATATTGTACAGTTTTAAATGTGATATTCGTTACCTGAGacgtttttttatttatattactCCTTAGAGCCCCATTTCAAATCTTCGTTTCTGTTCTGAACTTGGACGAACGCCCTTTCCACTTTTCCTGTTGTATTTCCGTTCTTACATTGCTGATGTTACGCTGATGCGAGCAACCTCATTAAATCAAAACCGGTATTTCCATACACTGTACTCCCAATAGGGCCCCTTCACTCAGCATACACAGTAATGGGATTATCTGAACAAGCCGAAAGATCAGACAAATAGCTCTCGTATCTCTGTCTGCACTGCATAGACTACATGTAAAACCTTTCTTCATGCCATTTCTGTTACCTATTGTCTTGAGGACCACAACCTAAGAGACTTAGGCCTAATTGTAGAGAACATCTGTAAATTGTAAATTGTGAGATATTTTGTCATATCATGCATAGCCTCGTTAAAATAGTTTTAAACCAAAATATTGACGGCTGTGGATTGGAAAATTACCCATAACGTGtaaattgtattattattttttttatatgttttttaaaataatttatgTGACTTGTTGAATGTTTATTTAATTTACATCGTATACACTGGAGATTGAATACATGCCTATATAGCCATCATTTTAGACAATGCTATTATAAGGTGAAAATGGTTATATGGCAACTACAAACCAAACGAGTCTTATGTCATGCAAGTATTTTAGGAGCCCATAAATGAAAAAGGAGAGTACATTTTTGTACTACATTGAAAAAAAGGGTTTCAAGGGCTGATAAACGATAACGGAAACCTGTTTAAGGATAGAACTAATGAAATACAAGTGTACTGCCCTATGTCCCCAGGGTCTCTGTGATACATGGATGTGTACATTTTATCTCTGTATTTAAAATATTAGCCTACTAACTGTATGAATTTACATATTTTAACTTGAGAAAAAATGTGCAATATAAAAATGTAAATCATGTTATTTATTGATGGTGTTTGTTCTTgggaaataaatatttaaaaatcgtcgaatatt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09320 EVX; homeobox even-skipped homolog protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305316 lncRNA downstream 10474 50108940 ~ 50109195 (-) True G268722
TU305296 lncRNA downstream 38983 50080483 ~ 50080686 (-) True G268702
TU305295 lncRNA downstream 41346 50078119 ~ 50078323 (-) True G268701
TU305294 lncRNA downstream 41682 50077784 ~ 50077987 (-) True G268700
TU305266 lncRNA downstream 73379 50045926 ~ 50046290 (-) True G268673
TU305512 lncRNA upstream 114428 50239048 ~ 50239267 (-) True G268885
TU305526 lncRNA upstream 123832 50248452 ~ 50251001 (-) True G268899
TU305554 lncRNA upstream 147487 50272107 ~ 50272358 (-) True G268927
TU305558 lncRNA upstream 149635 50274255 ~ 50274469 (-) True G268931
TU306273 lncRNA upstream 153698 50278318 ~ 50278522 (-) True G269600
XM_036974455.1 mRNA downstream 19972 50084100 ~ 50099697 (-) True lnpa
XM_036974456.1 mRNA downstream 19982 50084100 ~ 50099687 (-) False lnpa
XM_036974457.1 mRNA downstream 20118 50084100 ~ 50099551 (-) False lnpa
XM_036974458.1 mRNA downstream 20118 50084100 ~ 50099551 (-) False lnpa
XM_021597203.2 mRNA downstream 137799 49979196 ~ 49981870 (-) True LOC110520125
XM_021597223.2 mRNA upstream 200489 50325109 ~ 50332906 (-) True nfe2l2a
XM_021597227.2 mRNA upstream 253780 50378400 ~ 50436074 (-) False pde11a
XM_021597228.2 mRNA upstream 315581 50440201 ~ 50442930 (-) False LOC110520139
XM_021597239.2 mRNA upstream 395645 50520265 ~ 50525331 (-) True prkra
XM_021597241.2 mRNA upstream 409459 50534079 ~ 50542111 (-) False LOC110520142
TU305117 other downstream 218131 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 248024 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 552195 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 553680 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 616698 49502416 ~ 49502971 (-) True LOC118944672
TU306341 other upstream 315585 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1003820 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1348704 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1472779 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1473315 51597935 ~ 51600230 (-) True il1rl1

Expression Profile