RNA id: TU314294


Basic Information

Item Value
RNA id TU314294
length 981
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G276844
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56484375 ~ 56485672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGGTTCTCTTGACCTCTTTCTGGTGCTCAGTGAGAACTCTCTCCTTGGTCTCAGGGGGGATGAACACAAAGTCTATCGAGGCCTGCTCCTCCAGTTCCTGTCCTTTATCTCCTCAGCCCTGGGCAGTAGAGAATCCCTCTTCACCCCAGAAGTGACCTGTACTCCACTCAGTTTGGTCTCCAGCTGAGAGCTCTCACTCTGCATCCACAAAACATAATCCAGGGATTATTACACCATTCATATGAAACCTGCTCCGATTTGACTTATTCAACAGGGAAAACACTCACCGAGGACTGTCCACTGAGTTCATCTGGAACTTCAACAGACTGAAATCCAGGTAGAATGATAGGAGTGTTCTGCTTCACCTGGCTCAACACCGGCCTGGAAAAAACAAACATTAGCAAACATGAAAACCTTTTAGGGTCAGTTTAGGGCCAGTTTTCAGGACCCAGATTAAATACATTGCTGGACTTTAAAAGCAGTTTTATTGGCGATCCTCCACTGAATATGCTATTGGTCCAGGAAATCACCCCATAAATATAATATGGCTCATCTTAACATCCAAACAGATTCTTACTTGAGTTCCTCTGGATAGACGAGGACCAGAGTGTTGGCGAAGGTTGCATTCCAGAACTGTGTAGCTAAGGAGCGGACCTGCTTGCGCCGATGGAGGAACAGGACACAGAGCAAGGGGGACAGCAGGGAGAGCAGCTCATCATCATAGGCCAGGGCTGAACGGATCTGCAGGCACCCCAAGACATCACTCAGGAGCTTCTCCAGCTGCAGGGAAAGAACACACTTATAGTGAGACTAGCACCCAGACACAGATGATCGGTTAAAGATATGAAGCATGCAAAGAAAGTATCAATTACTTAGaaactgagcaaaaatataaacgcaacatgtaaagttttggtcccGTGGTTCATGAGCTGAACTttcaaaaatcccagaaatgctAAATACGCAGCAAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314293 lncRNA downstream 660 56483429 ~ 56483715 (-) True G276843
TU314290 lncRNA downstream 3893 56480259 ~ 56480482 (-) True G276840
TU314283 lncRNA downstream 14664 56468912 ~ 56469711 (-) True G276835
TU314273 lncRNA downstream 22579 56453003 ~ 56461796 (-) True G276829
TU314270 lncRNA downstream 35995 56448177 ~ 56448380 (-) True G276826
TU314381 lncRNA upstream 185822 56671494 ~ 56672592 (-) True G276907
TU314446 lncRNA upstream 332973 56818645 ~ 56819892 (-) True G276969
TU314475 lncRNA upstream 381538 56867210 ~ 56902275 (-) True LOC110520270
TU314588 lncRNA upstream 482364 56968036 ~ 57046855 (-) True G277110
TU314649 lncRNA upstream 568313 57053985 ~ 57054282 (-) True G277168
XM_021597431.2 mRNA downstream 435230 56047811 ~ 56049145 (-) True LOC110520254
XM_021597429.2 mRNA downstream 442677 56040760 ~ 56041698 (-) True LOC110520253
XM_021597426.2 mRNA downstream 466003 56017260 ~ 56018372 (-) True LOC118936311
XM_021597427.1 mRNA downstream 479590 56003832 ~ 56004785 (-) True LOC110520252
XM_036964483.1 mRNA downstream 484814 55997768 ~ 55999561 (-) True LOC110505323
XM_036974697.1 mRNA upstream 9479 56495151 ~ 56578648 (-) False LOC110520260
XM_036974696.1 mRNA upstream 9479 56495151 ~ 56578650 (-) False LOC110520260
XM_036974698.1 mRNA upstream 9479 56495151 ~ 56578650 (-) False LOC110520260
XM_036974701.1 mRNA upstream 9479 56495151 ~ 56578650 (-) False LOC110520260
XM_036974702.1 mRNA upstream 9479 56495151 ~ 56578650 (-) False LOC110520260
TU312498 other downstream 1072888 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1072888 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 1365163 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1801570 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 3233291 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 785110 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 917312 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1098714 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6228903 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8483877 64969549 ~ 64970755 (-) True G286522

Expression Profile