RNA id: XM_036964483.1


Basic Information

Item Value
RNA id XM_036964483.1
length 775
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110505323
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55997766 ~ 55999561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccccagcacaagatgaaCCTGTGTAATgctcgtgctgtttaatcagtgtCTTGATGtgcaacacctgtcaggtggatggattgtcttggcaaaggagaaatgctaaccAACAGGGATGTGTAACGATCTTCGTCTTCATCggatgaggagtaggaaggatcggaccaaaacgcagcttgATCATCTTCTTCGAGGACAAGAACTTCCAGGGTCGTTCCTATGAGACCAGTCAGGACTGCCCTGACATGTCCTCCCATCTGAACAGGTGCCACTCCTGCAGGGTTGAGAGTGGCTGCTTCATGGTCTACGATCGCCCCAACTTCATGGGAAACCAGTACTTCATGAGGAGGGGCGAGTACTCTGACTACCAGCGTATGATGGGAATGAACGACTGCATCAGGTCCAGCCGTAACGTCCCCATGCACAGAGGAAACTACAAGATGAGGATCTACGAGAAGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGCATGTCCGACTGCCAGTCCTGCAACGTGATGGACGGCCACTGGCTGATGTATGAGCAGCCCCACTACAAAGGCAGACAGATGTACATGAGGCCTGGAGAGCACAGAAATCTCAGGGAGATGCAGGGACACAATGGAATGAAGTTCAGTTCCATCAGAAGGATCACCGACTCCTGTTAAATTCACAGGACCACTTGTTCAATGAAACAGTTGATTTtataataaaaatgtgtttttcttattTAATATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313919 lncRNA downstream 20095 55977460 ~ 55977673 (-) True G276518
TU313897 lncRNA downstream 53609 55943419 ~ 55944159 (-) True G276497
TU313818 lncRNA downstream 60746 55936617 ~ 55937022 (-) True G276420
TU313832 lncRNA downstream 63638 55933836 ~ 55934130 (-) True G276434
TU313828 lncRNA downstream 73909 55920534 ~ 55923859 (-) True LOC110520241
TU314075 lncRNA upstream 181197 56180758 ~ 56181147 (-) True G276661
TU314078 lncRNA upstream 186591 56186152 ~ 56186362 (-) True G276664
TU314090 lncRNA upstream 200612 56200173 ~ 56200414 (-) True G276675
TU314105 lncRNA upstream 217677 56217238 ~ 56217453 (-) True G276689
TU314155 lncRNA upstream 272790 56272351 ~ 56361440 (-) True G276722
XM_021597424.2 mRNA downstream 9720 55987103 ~ 55988048 (-) True LOC110520250
XM_036964471.1 mRNA downstream 12291 55983873 ~ 55985477 (-) True LOC110520251
XM_021597425.2 mRNA downstream 12296 55983873 ~ 55985472 (-) False LOC110520251
XM_036974656.1 mRNA downstream 73885 55890382 ~ 55923883 (-) False LOC110520241
XM_021597427.1 mRNA upstream 4271 56003832 ~ 56004785 (-) True LOC110520252
XM_021597426.2 mRNA upstream 17699 56017260 ~ 56018372 (-) True LOC118936311
XM_021597429.2 mRNA upstream 41199 56040760 ~ 56041698 (-) True LOC110520253
XM_021597431.2 mRNA upstream 48250 56047811 ~ 56049145 (-) True LOC110520254
XM_036974697.1 mRNA upstream 495590 56495151 ~ 56578648 (-) False LOC110520260
TU312498 other downstream 586281 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 586281 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 878556 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1314963 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2746684 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1271221 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1403423 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1584825 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6715014 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8969988 64969549 ~ 64970755 (-) True G286522

Expression Profile