RNA id: XM_021597424.2



Basic Information


Item Value
RNA id XM_021597424.2
length 696
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110520250
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55987103 ~ 55988048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGAGCCACATATTCTTTGGCTGTCGGCTCAAGTATAAAAGCGATAGGGGAACATACAGAAAATTGTACAATCCTGAGACCAATACAGTAACCGCAACCATGTCTATGGGAAAGATCATCTTTTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCTCCAGCGACTGCCCTGAGCTGACCTCCTACCTGAGCAGGTGCAACTCCTGCAGGGTTGAAAGCGGCTGCTTCATGGTCTATGATCATTCCAACTTCATGGGAAACCAGTACTttgtgaggaggggagagtatgGTGACTACCAGCGTATGGGCATGAACGATTGCATCAGGTCTTGCCGTAACATCCCCATGCACAGAGGAAACTTTAGGATGAGGATGTACGAGAAGGAGAACTTCGGAGGTCAGATGCACGAGCTGAGCGATGACTGTGAGTCCATGACCGATCGTTTCCGCATGAACGACATGCAGTCCTGCAATGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCAACTACAGAGGCAGGCAGATGTACATGAGGCCTGGAGAGTACAGGAACATGAGAGATTTGAGCATGCACATGGGCTCCAACCCCATGAGGGTCAACAGCATGAGGCGTATCATGGATTCCTGTTATTAAACGCACCAATGTCTAAAATTTGAGTATAAATAAAATCACTTACCTTTTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313919 lncRNA downstream 9430 55977460 ~ 55977673 (-) True G276518
TU313897 lncRNA downstream 42944 55943419 ~ 55944159 (-) True G276497
TU313818 lncRNA downstream 50081 55936617 ~ 55937022 (-) True G276420
TU313832 lncRNA downstream 52973 55933836 ~ 55934130 (-) True G276434
TU313828 lncRNA downstream 63244 55920534 ~ 55923859 (-) True LOC110520241
TU314075 lncRNA upstream 192710 56180758 ~ 56181147 (-) True G276661
TU314078 lncRNA upstream 198104 56186152 ~ 56186362 (-) True G276664
TU314090 lncRNA upstream 212125 56200173 ~ 56200414 (-) True G276675
TU314105 lncRNA upstream 229190 56217238 ~ 56217453 (-) True G276689
TU314155 lncRNA upstream 284303 56272351 ~ 56361440 (-) True G276722
XM_036964471.1 mRNA downstream 1626 55983873 ~ 55985477 (-) True LOC110520251
XM_021597425.2 mRNA downstream 1631 55983873 ~ 55985472 (-) False LOC110520251
XM_036974653.1 mRNA downstream 63220 55890382 ~ 55923883 (-) False LOC110520241
XM_021584491.2 mRNA upstream 9718 55997766 ~ 55999047 (-) False LOC110505323
XM_036964483.1 mRNA upstream 9720 55997768 ~ 55999561 (-) True LOC110505323
XM_021597427.1 mRNA upstream 15784 56003832 ~ 56004785 (-) True LOC110520252
XM_021597426.2 mRNA upstream 29212 56017260 ~ 56018372 (-) True LOC118936311
XM_021597429.2 mRNA upstream 52712 56040760 ~ 56041698 (-) True LOC110520253
TU312498 other downstream 575616 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 575616 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 867891 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1304298 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2736019 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1282734 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1414936 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1596338 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6726527 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8981501 64969549 ~ 64970755 (-) True G286522

Expression Profile