RNA id: TU313897



Basic Information


Item Value
RNA id TU313897
length 741
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G276497
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55943419 ~ 55944159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAGATATTACTGTATGAGCAGATACTGTTGCACAAGGTGAGATAAATAACTATGTAGAGTCCTGTGTGATTAGCTACCAGTTATGAAACAAATTGGCAGAAATAGTTTTGAAAATAGCTACGGTAGCAATTTATTTAGCTATAAATCACAACTTACACATGTGCTCATACTCTACTTTTTCAGTTCGCACACATCTACTTTTAGGTGCATATGTGAGTAAAATGGTTGCAATGTATAGAGCCCTGTTTAGCATAGTAGCATAGAGGACATACTGGAAGAGGACTTACATTTTCATCAGAGAAGAGGTCCACAGCCCTTTCCAAGTTATCCAAAGTGTTGCGTTGAAGGTCTTTCAAGATTATAATCTAAAAGGATATGTTGTTTTTAGTTGTTGCTTTACAGCACGAGATTTCTTTATGTAATGAATAGCGCTATAGAAGTTGAATAAACAATTTTTCTCATTATTACCTGTCAACAACTACCATGCTTTTATGTCAAACTAACACTGAAGTCTGTGAGAGAATAGATCAATATTGTTACGAAGAGCACCTCTAAATAAGTGACCTGGTAAGGAGCAAAATTTGGATCCCACTAGGTCTTATTCAAAGAGATGGACTCAGAGTCCCTCTCTAACCCACCAGTTGGTTGTGCTTGAATCTGCGAATAGCCAGGTCAAAATTCAGAGACTCCACTTGTTTCCGTAGGTGCACAGTTTCCACTTCAAGCTGtctgcttctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313818 lncRNA downstream 6397 55936617 ~ 55937022 (-) True G276420
TU313832 lncRNA downstream 9289 55933836 ~ 55934130 (-) True G276434
TU313828 lncRNA downstream 19560 55920534 ~ 55923859 (-) True LOC110520241
TU313833 lncRNA downstream 30942 55911403 ~ 55912477 (-) False LOC110520241
TU313819 lncRNA downstream 61861 55881007 ~ 55881558 (-) True G276421
TU313919 lncRNA upstream 33301 55977460 ~ 55977673 (-) True G276518
TU314075 lncRNA upstream 236599 56180758 ~ 56181147 (-) True G276661
TU314078 lncRNA upstream 241993 56186152 ~ 56186362 (-) True G276664
TU314090 lncRNA upstream 256014 56200173 ~ 56200414 (-) True G276675
TU314105 lncRNA upstream 273079 56217238 ~ 56217453 (-) True G276689
XM_036974653.1 mRNA downstream 19536 55890382 ~ 55923883 (-) False LOC110520241
XM_021597425.2 mRNA upstream 39714 55983873 ~ 55985472 (-) False LOC110520251
XM_036964471.1 mRNA upstream 39714 55983873 ~ 55985477 (-) True LOC110520251
XM_021597424.2 mRNA upstream 42944 55987103 ~ 55988048 (-) True LOC110520250
XM_021584491.2 mRNA upstream 53607 55997766 ~ 55999047 (-) False LOC110505323
XM_036964483.1 mRNA upstream 53609 55997768 ~ 55999561 (-) True LOC110505323
TU312498 other downstream 531932 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 531932 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 824207 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1260614 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2692335 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1326623 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1458825 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1640227 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6770416 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9025390 64969549 ~ 64970755 (-) True G286522

Expression Profile