RNA id: TU314075



Basic Information


Item Value
RNA id TU314075
length 390
lncRNA type intronic
GC content 0.36
exon number 1
gene id G276661
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56180758 ~ 56181147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tacagtgccttcggaaagtattcagaccccttgactttttccacattttcttacgttacatccttaatctaaaatggattatatagaaaacaaatcctcatcaatctacacataatacctcataatgacagagcaaaaacaggtttttagaatttgttAGAAGTGTattaaaacaaaaaacagaaataccttatttacataagtattcagaccctttgccatgagactctaaattgagctcaggtgcatcctttccattgatcatccttgagatgtttctacaacttgattggagtccacctgtggtaaattcaattgattggacatgagtgtgcaagagcgcagaataactgatacatttacgaacactcaacacccgctgaatatggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313919 lncRNA downstream 203085 55977460 ~ 55977673 (-) True G276518
TU313897 lncRNA downstream 236599 55943419 ~ 55944159 (-) True G276497
TU313818 lncRNA downstream 243736 55936617 ~ 55937022 (-) True G276420
TU313832 lncRNA downstream 246628 55933836 ~ 55934130 (-) True G276434
TU313828 lncRNA downstream 256899 55920534 ~ 55923859 (-) True LOC110520241
TU314078 lncRNA upstream 5005 56186152 ~ 56186362 (-) True G276664
TU314090 lncRNA upstream 19026 56200173 ~ 56200414 (-) True G276675
TU314105 lncRNA upstream 36091 56217238 ~ 56217453 (-) True G276689
TU314155 lncRNA upstream 91204 56272351 ~ 56361440 (-) True G276722
TU314270 lncRNA upstream 267030 56448177 ~ 56448380 (-) True G276826
XM_021597431.2 mRNA downstream 131613 56047811 ~ 56049145 (-) True LOC110520254
XM_021597429.2 mRNA downstream 139060 56040760 ~ 56041698 (-) True LOC110520253
XM_021597426.2 mRNA downstream 162386 56017260 ~ 56018372 (-) True LOC118936311
XM_021597427.1 mRNA downstream 175973 56003832 ~ 56004785 (-) True LOC110520252
XM_036964483.1 mRNA downstream 181197 55997768 ~ 55999561 (-) True LOC110505323
XM_036974697.1 mRNA upstream 314004 56495151 ~ 56578648 (-) False LOC110520260
XM_036974696.1 mRNA upstream 314004 56495151 ~ 56578650 (-) False LOC110520260
XM_036974698.1 mRNA upstream 314004 56495151 ~ 56578650 (-) False LOC110520260
XM_036974701.1 mRNA upstream 314004 56495151 ~ 56578650 (-) False LOC110520260
XM_036974702.1 mRNA upstream 314004 56495151 ~ 56578650 (-) False LOC110520260
TU312498 other downstream 769271 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 769271 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 1061546 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1497953 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2929674 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1089635 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1221837 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1403239 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6533428 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8788402 64969549 ~ 64970755 (-) True G286522

Expression Profile