RNA id: TU321251


Basic Information

Item Value
RNA id TU321251
length 4145
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G283251
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61643098 ~ 61647279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACGACCTGCTCCCGACACCCATAATTCATGAATAAGATTTATTTGATTTCATTCATCATTAATGTAACCACAATGTTCAAATACATACAAATAAATAACATGTTTATTTGTGGATGATGTAGTAGTCTGCAAGGACTGACCAAAACTTCAATTTAAGTGAAGTGGCAAAACAACAACATTCTGACATGCAGTCCTCAATGAGGACTGTGATGAACCATAAATAACCATAAATGACCCATTTCTCTGTGTCTGGCATCTGTCTAGGAACGGCAGATGATCCAAACTAGAATGAGAAGACAAAACACAGTATGCTGATGTAATGTTCACAATGTGTCAACGTGCTGTACACAGAGAAACCATAATAAACAATATAAAGGAGCGCTTAAGAGAAAAGTAATAACCTCAGCAACACAGACCTGTTATTAACACCACACCAAGTCAAACTGAGTGACACACAAACAGGCCCACAGTCCCAGTGCCCATGGTTGGGGCAGttctgcgtctcaaatggcactttattccctactgcactactttagaccctggttaaaagtagtgcactatgtagggaataggaggccatttgAGACGCAACCCAGTGTGTTTTCGCCTTGCCGTCAATGGTGCCCATTTATGCTCAGGGATCATTCTGTGCCTCTAAACACGTACGACCTAGGAACACCTGATACCTCTGGAGGAAATGCCAGAGAATTAGAGGCAGGGGCTGGAGGTGTGGAGCGGGCCGGACAAGCGACTGGGTGCCACCTCAGGGGTGATGCACAGTTCAGCATATAGGGGAAAAGAGAAGTTATAAGCTGCATGTTCGTCTGTGCTTGACCATTAGTAAGTACAAGTAAGCTACAGATAAGTACAGATCATCTACAGCTATGTAGTAAGTGGGTCATTCCACCAAATTAGTCCCTTTTGCATTCCTTCAATGTTTTAGGTGCACCAATATTTAATTTTAACAAACATTATGTACATAATTTGTCCAAACCGGAAACAACAAGTTTAATTGGGTTGCATCAACTACTGCTTTTAAAAAGCACCACTTAAATGTATGCATTATACTCATTTTACACCTTtgtcctgggttgtgttcattagggtaaCAATTGAAAACGTTATTTTTAAAGATTCTACAGAAAGTaagtccaaatcaaatcaaatttagtCCCTGCACGATCCAATCAATTTTcctctgtttggtgcctaatgaatacgacccagatGCGTGTTTTTGTTAGTGTCTcacattaaaaacaaacaaaaattcaTACCTGTATTTCTTATCTTAAATAGACGTTAAAAACCACTAAATGTATTTGTCCTGAGATATTTTCTTTAAAGGGgtaatagagacagacaggtggccTGAACTGGAGAGTAGAAACACAGCAGAATTAACAGTATCTTGTCTGATAGAGATCGATATAGTCTTTTTACTAATGATATTTTCAAGTTCAGAGACAGTGAAATGTATTGCATAGTTAgttccagacctgggttcaaatactttaTCTGACCTTGCCTGGCTTAATGAGCCATTAGAATATTCCCAAAACGgtaaaccctgcccatctggcactACAGGCAAGCTGAGCAAAACAATCAAAGTATTTAAAAgacttcaaatagtatttgaaaccaGGTCTGATTAGTTCCTCATAGAGATGGCATTAGAAGAAGAGGGCATGGTAATTTACAGCTGACACTAAATTCCCATACAACCATAATCATCTTCTAACTCTATTTTTCACCTTTAGGACAAGAGATGCACCCTGATCCACATCTATGTGCTTAAATACAACCCATACACAACGTCAGGATCATATCATAACATAATAACAAATGTCACCAACAACCAGAGACGGAATTGGAGAAAAGTCACTCTGGGAACTTACTGATCTTAGAATTTACCGTAAAGTAACGACCGAGTGAAAATATAACTTTTAAAAGtttatattctgttaactcatatccCCCCCAAATTGTTGACTCTTCCTATGCTTATATGTTGCCAGCAttaattgaaaaaaataaaacacaaaaatgCTTGCCATTTCCTCATAGAACATGATGTCATCtccatgaggaggaggagatagccaatcagcggtctactagcattaatatttttaatgaccgggtatatgcccacaccattcttttgttggggtacacccataacattccaacacagaaaaactGCTTTTTAACACacttaataaaaaaaatagaagGACAACTATTTAGCTCATATTGTCAGTAATTATAGGTCATGTTTCActgaaatctggaaacactgggcaGTTAACTTAAACACATTTTGTACATGTCAAAATTATTTTACTTTGCGAACTCTAGTTCACCTCCAATTACACCCCTGTCGACAACACATGAGTAATGCAGTAGTTATTCTGAGTGTTTGAAATAGGACGGTTAAGACAGAGAACAAGACAGTTCACTATAACAGCAAGTACACAGCAGCATTAGTGTCTCCAAGGCACACAGCATACACGTCTTAAGATACAAGGGAACTCATTTATAAACCTTTGGCAGGTACAAAATAAATCTCAAAAAATGTGTGTGCCAATTTTCACACAAAAGTTGGCATTTATAAAAACTGAACTTGATGTAAAAACGTGCTCACCTTCTCGCAGACTTTAGACAATGCTTATGCAGATTCTAGTGGTTGAAATATTGTATTGCAAGCAGGcaagtacatttatattttgtgCAAATGGAGGATATGGACACGCTTATGAATAACAATAAACAGGTTAATAACAAGATGCAATCATTTTCCGTTAGTGAGTAAAGAGAAAATATATTTAGTTTATCTTTGCATTTTAAAATAATTAGACAATCATCTATCTATATCCCTGGCTACTATGTATTATTTATTTCCATGATCATTGCATAATCAATTCCTCACCTTTTCTGTGATGGTGTCATACTCACGAGGTAGCCTATATCGGGCAACAACAGGAATAGCATTCATCTCATATCTGCTTTAATTggacccacttcacagtagtaaaTAGATAAGCTATTTCAAGTATTTTGCTCTATGCCATCCGATCCAGAGCGCAGTAGTATTAACGGTGGAACAGACGGGTTGCAGGTTACTTCTGTAGCCCACATCTGAATACTGTAATTTAACATTTTTTGAGTAGACAATATTGCATTTATACACATAATATATATTTTCATAACTATTGCAGAATAAATTCTTCACCTTTTCTGGACATTATTGGTCCATATTTCTGAAGTAACCATAGCCTACAAAAAATGACCATGCGCATCTCTCATTTAATTAAGTCTATTAGATAAGCTATTATTTCAAGTATTAAATTAAAATTTACCAGGTGAACAGGTGCATTGTAGTGTGCATGTCTACCACTGTAAGTAGAGAATGTTTCAGAATTCGAGGGCAGTGTAGCATCGTTCAGAGAAAAAGTCATTGCAAAACATTAGGCCCAATTAAATTAAAACGGTCTGCTTACAGCTCAACAGCAATTTGCAATAGTTGTCGTCTTTCATTAACTTTTTGTCTATCAGATAGCCTAGGCCTACAGCAAATGTCATTGCAAAAGTTTAACATTCTGCAATCACCTCCAAAGACATTTGATCAAGTTCGCTATTGCTATTTCCTTTAGAAAACTGCTCAAACACTTCGAAAGTATACAGCGAATAAGGGCGTTTTTGTCACCATAAAAGGTAGATGGGCGTTTTTCAGACAGAGTACTGATGCTCTTTCACTCACAGTTTCAGGACGGGTGTGATTTATAACAGTAAACATATGTATGCCAAGTTTATAAAACTCTATTTTTGTATGTATGCAGTCTTTTCAGAAATGGCACATGCAGATATTCAGATATTTAGTGTGAAATTTACGCAacggttataaatgaggccccagagtATCTGTCAGTCAGCAGACTACTGAGGAGAAGAAAccattgaaataaaaaaaaactctaCCTATATGGTTGAAAACACAGTGTTAAGGTATCTGCCATCATCAGACTCTCTGGAAATAGTAGAAACAGTGGTAAAAAGGTTGTTGGGCTGTTCAGTGTATGGCTTCACCAGTGTTCAGGTTGAGTAGAATGGGTAGACTTTACCAGTGGTTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321223 lncRNA downstream 39901 61602757 ~ 61603197 (-) True G283224
TU321192 lncRNA downstream 74623 61567975 ~ 61568475 (-) True G283198
TU321191 lncRNA downstream 80707 61562163 ~ 61562391 (-) True G283197
TU321182 lncRNA downstream 88370 61552148 ~ 61554728 (-) False G283195
TU321184 lncRNA downstream 88537 61552148 ~ 61554561 (-) True G283195
TU321259 lncRNA upstream 6046 61653325 ~ 61689575 (-) True G283256
TU321287 lncRNA upstream 45939 61693218 ~ 61698319 (-) True G283282
TU321383 lncRNA upstream 198136 61845415 ~ 61849699 (-) True G283373
TU321411 lncRNA upstream 250454 61897733 ~ 61905194 (-) True G283398
TU321562 lncRNA upstream 501038 62148317 ~ 62151490 (-) False G283541
XM_021597549.2 mRNA downstream 60038 61578579 ~ 61583060 (-) True LOC110520317
LOC110520318 mRNA downstream 94846 61506974 ~ 61548252 (-) True LOC110520318
XR_005051416.1 mRNA downstream 372526 61270516 ~ 61270572 (-) True LOC118964366
XM_021597545.2 mRNA downstream 388460 61202903 ~ 61254638 (-) True LOC110520314
XM_036974821.1 mRNA downstream 388678 61202903 ~ 61254420 (-) False LOC110520314
XM_021597553.2 mRNA upstream 16426 61663705 ~ 61705190 (-) False LOC110520320
XM_021597551.2 mRNA upstream 16426 61663705 ~ 61728597 (-) False LOC110520320
XM_021597552.2 mRNA upstream 16426 61663705 ~ 61728601 (-) True LOC110520320
XM_021597555.2 mRNA upstream 121224 61768503 ~ 61772972 (-) True LOC110520322
NM_001124360.1 mRNA upstream 242830 61890109 ~ 61916432 (-) False il-1r1
TU315276 other downstream 4053915 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 4239523 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 4345336 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 6231611 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 1067296 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 3322270 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 3366980 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 3407421 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 3407421 65054700 ~ 65075985 (-) True G286638

Expression Profile