RNA id: TCONS_00030593


Basic Information

Item Value
RNA id TCONS_00030593
length 3113
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_015255
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10642047 ~ 10687230 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAAAAAAGCACTCCTTTAGGCAGAAATAGTGTACGCCTGCGCTCTTGACACGCCGCTGTCTCGCTGCTTTTAAACAGCTGCTCTTGAAAGTGTTAGCCGCTGGATGTCAACCAAGGCGACTCGAATGACATGAATTTCTGAAATAACATGCACATTTCCACGGTGGCCGTCGGGAAGTCGGATATCTGTGAGAGGATCTCGGCTTGTCCGCGTCATGTGTAGCGCGAGCCCAATGACTTGAAGTTCGCCGGGCATTATTTCATTTCATTCGGTATATGGAGACTCTGCTCTGGATCGCGCACAGGCTTTGAGATGATCCATTTCTGCGATGGCGAGGGGTCTGTTTTCACGGGCCTGGCTGTCAAAGACGCACCATTTTCAGGCTCGCCTGTCCTATATTCGAGTGAAGTATCTCTTTCTCACGTGGCTTGCTGTGTTTGTGAGCAGTTGGGTTGTTTATGTCCAGTACTCCACGTACACTGAGCTGTGCAGAGGACGAGAATGCAAGAGCATCATTTGTGACAAATACAGCAAAGGCATTATCGATGGTTCAGCCTGCAGCAGCCTGTGTGAAGAAAGCAAACTGTACTTTGGAAGGTGCCTCTCCACCAAACCAAACAATCAGGTGTATACGGGCAGCTGGGGTGACCAGGACGGTGTCATCAAGTGTCAACTAAGTGACGTCCTGCACTATGAGCTGGGGGAAGAGCTGGAGCCAAAGAAAGAGATCACACTCTTCGAAAAGCCCACCCGAGGAACATCTGTAGAGAAGTTCAAAGAAATGGTCGCAAGTCATTTGAAGGCAAAAGTTGGAGAGCAAGCTAACCTGTCCAATTTGGTTAGCCTAATTCTTTCAGTGGCCGACAGCAACAAAGATGGCCACATCTCTCTCCCGGAGGCCAAGTCTGCCTGGGCTTTATTACAGCTCAACGAAGTTCTGCTGGCGGTGGTGCTCCAGGGCCGAGAGCACACACCTAAACTGCTGGGCTTCTGCGGGGACCTGTACGTGGTGGAGCGGGTTCCTCATGCTCCGCTGTTTGGTATCACCTTGCCCTGGCCTATGGATCTGTGGATCCCCGCGGGAATGCGGCGAAGCATGGACCAGTGGTTCACACCGTCCTGGCCCCGCAAGGCCAAAATCTTCATCGGCTTGCTGGAACTTATTGAAGACATCTTCCATGGTACCTTTGGGAGCTTCTTAATGTGCGACATGAGAGCCAGTTCGTTTGGCTACACCGACCGCCACGACCTCAGGCTAGTGGATGGCCGGCGTGTAGTAGCCGAGGAGGCCTTCAAACAGGCCATGATCCTCCAGCGCTGTAAGGACCACGAGGACTGTGTGTACGGTGCGGACTGTAGGACTTCATGCGACCTTTCAGAACAGCGTTGCACAGCCGAGGTGGCTCAGCCCAATCTGGCGCGAGCCTGCGGAGCAATGAAGGATTACCTCCTACGAGGAGCTCCGTTCCATCTGCAGGAAGAGCTAGAGAAGCAACTGTACGCCTGCATGGCTCTCAAGGGTTCGGCTGAGCAGATGGAAATGGAGCACTCACTCATCCTCAATAACCTCAAGACCCTGCTGTGGAAACAGATCTCACACACCACCGACTCCTGAAGAGAAGCCAGGGTGGTCAGGGGTGACCAAACTTGGTCcagaagggccggtgtcctgcaaatattatttacaaccccaatcagactcacctgggctagctaatcaagctcttactaggttttctagaaacatccttgcaggtgtgttgaggcaagttggagctgaagTTTGCAGAACACCgctcctccaggaccaagtttgggcacccctgatttagattcTTGAATGTCTTCTGAAGCACTTGAGGCCATTTTCAAGATGGCTGCTGGAAGGTAAAGTTGCCAGAAATAAAGGTTTTCTTTCTTGATTAGGGGGGGAAACGTCAAATTGTGAGGAATTATTTCTCAGGCTCAACGTTGAAGTTCACGTTTCCGTTTCATGCTTTGTCGTCATACACAAGTGATCGATGATCATGTTTATTCTACACTTCCTTCAGATGTTATGAAGGAGCAAGTAATGCTAACTTTGCATCCGTTGTTGGATGCTAGCGTAGAAAGTGAAGGAATGCACTCACCACTGAGTGTGGTTGTGTAAGTCTCGTATTGTAACGTTTGTCACACATGAGCACAGCAAAAAGAGCCATAAAAGAGCCATTGTGAAATGGAAATACTAATGCCTTGATATGCATGTTGCCAGTGAGTGTGTTATTTTGAGTTCGATGCTTGTGTGTACTTCTCTTGGGTCAATTCTCGGAAATGATCAAGCCGACCACTTATGATCTGATggtagcttaaaaaaaaaaaggttcaattTGTTGACAGTATTAGTTATTGCAATAGCtatcagcatttattaatataggAGAATGTAAACTAATGCGTTTTAATAGTTTGAAACGTCAGTTGtgccaaacctgtttgagcttcATTATTCTGTCTAACACAAAATAATTCAAAGTACAATTTCAAATTCATGCATTGTTTCCTACCATGAATGTAAACTGCGACAAttacaaacattcttcaaaatattttcttttgtattcaacaaaaacaaactaaaatggctgttttttaccatttaatctaaattaaaaatgttgtaaTTAATAAGATGCGATGCCTATTGCATTAACCAGTGTAAAtcaaattaatcttttttttttttttgtgaaatgttgAAATGTTTACAGGAGTCTTGCGAGTAACACTACAACAATGAAGCCCTACTCAACCATGATAGTTCACAGAGTTGATCATTATTTATTTCTAATGTTATTTTAGTAATTTAGGCatgtctaataaataaataacatttagatTTCAAGCTAAAGCTGTATGAGATGTCTACCATCACATTATGATGTactaatgaatgaaggaattaagAGGTGCTTTGTTTGTTGATCAGCCATTTTCAATGGGATGTTTCAGATTGTTTGTCAAACTGCTTCAATTTTGTGTACTCATAAATCCCACTGCTGCTGACTTTAAATGGAGATTTTTATAAAAGTTGATTGCATGACTTTGCACATTAAAAGTGTTTCTCAAATCTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-4286 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human DIPK1A (divergent protein kinase domain 1A).

Ensembl:

ensembl_id ENSDART00000091570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033489 lncRNA upstream 34718 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00033488 lncRNA upstream 77661 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00030592 lncRNA upstream 225775 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033487 lncRNA upstream 356418 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030570 lncRNA upstream 803398 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00030612 lncRNA downstream 368086 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030616 lncRNA downstream 521233 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033490 lncRNA downstream 941772 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA downstream 941781 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA downstream 941813 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030591 mRNA upstream 357475 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030589 mRNA upstream 472614 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030587 mRNA upstream 490208 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030586 mRNA upstream 490592 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030588 mRNA upstream 491897 10147123 ~ 10150150 (+) True XLOC_015247
TCONS_00030595 mRNA downstream 22327 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA downstream 22327 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030596 mRNA downstream 22480 10709710 ~ 10735727 (+) True XLOC_015256
TCONS_00030597 mRNA downstream 79514 10766744 ~ 10785649 (+) False XLOC_015257
TCONS_00030598 mRNA downstream 84557 10771787 ~ 10785866 (+) True XLOC_015257
TCONS_00030590 other upstream 435929 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 659094 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 766402 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 800183 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 808241 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030605 other downstream 319427 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 556656 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1069694 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 1689592 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 1707393 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_03277921_03285364.mRNA True 1413 mRNA 0.52 4 CI01000004 3277741 ~ 3285364 (-)