Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030612 |
| length | 935 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 5 |
| gene id | XLOC_015262 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 11028923 ~ 11063878 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006631 | fatty acid metabolic process | biological_process |
| GO:0006637 | acyl-CoA metabolic process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0036042 | long-chain fatty acyl-CoA binding | molecular_function |
| GO:0047617 | acyl-CoA hydrolase activity | molecular_function |
| GO:0000062 | fatty-acyl-CoA binding | molecular_function |
| GO:0016790 | thiolester hydrolase activity | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-538 | Predicted to enable acyl-CoA hydrolase activity and long-chain fatty acyl-CoA binding activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Predicted to be active in cytosol. Is expressed in cloaca; lens; proctodeum; and solid lens vesicle. Orthologous to human ACOT11 (acyl-CoA thioesterase 11). |
| ensembl_id | ENSDART00000145289 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033489 | lncRNA | upstream | 447987 | 10604513 ~ 10607329 (+) | True | XLOC_015254 |
| TCONS_00033488 | lncRNA | upstream | 490930 | 10563499 ~ 10564386 (+) | True | XLOC_015253 |
| TCONS_00030592 | lncRNA | upstream | 639044 | 10386479 ~ 10416272 (+) | True | XLOC_015252 |
| TCONS_00033487 | lncRNA | upstream | 769687 | 10284761 ~ 10285629 (+) | True | XLOC_015251 |
| TCONS_00030570 | lncRNA | upstream | 1216667 | 9838071 ~ 9838649 (+) | True | XLOC_015238 |
| TCONS_00030616 | lncRNA | downstream | 144619 | 11208463 ~ 11209682 (+) | True | XLOC_015264 |
| TCONS_00033490 | lncRNA | downstream | 565158 | 11629002 ~ 11633323 (+) | False | XLOC_015266 |
| TCONS_00033491 | lncRNA | downstream | 565167 | 11629011 ~ 11633323 (+) | False | XLOC_015266 |
| TCONS_00033492 | lncRNA | downstream | 565199 | 11629043 ~ 11633323 (+) | True | XLOC_015266 |
| TCONS_00030618 | lncRNA | downstream | 584319 | 11648163 ~ 11648838 (+) | True | XLOC_015267 |
| TCONS_00030609 | mRNA | upstream | 7151 | 11029144 ~ 11048165 (+) | False | XLOC_015262 |
| TCONS_00030611 | mRNA | upstream | 12249 | 11031364 ~ 11043067 (+) | False | XLOC_015262 |
| TCONS_00030607 | mRNA | upstream | 16283 | 11029138 ~ 11039033 (+) | False | XLOC_015262 |
| TCONS_00030604 | mRNA | upstream | 123546 | 10914023 ~ 10931770 (+) | True | XLOC_015260 |
| TCONS_00030603 | mRNA | upstream | 174767 | 10878406 ~ 10880549 (+) | True | XLOC_015259 |
| TCONS_00030613 | mRNA | downstream | 55471 | 11119315 ~ 11126221 (+) | True | XLOC_015263 |
| TCONS_00030614 | mRNA | downstream | 141951 | 11205795 ~ 11210168 (+) | False | XLOC_015264 |
| TCONS_00030615 | mRNA | downstream | 142473 | 11206317 ~ 11208748 (+) | False | XLOC_015264 |
| TCONS_00030619 | mRNA | downstream | 606426 | 11670270 ~ 11677705 (+) | True | XLOC_015268 |
| TCONS_00030620 | mRNA | downstream | 621898 | 11685742 ~ 11833284 (+) | False | XLOC_015269 |
| TCONS_00030605 | other | upstream | 48526 | 11006657 ~ 11006790 (+) | True | XLOC_015261 |
| TCONS_00030590 | other | upstream | 849198 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| TCONS_00030577 | other | upstream | 1072363 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030571 | other | upstream | 1179671 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030569 | other | upstream | 1213452 | 9838032 ~ 9841864 (+) | False | XLOC_015238 |
| TCONS_00030617 | other | downstream | 180042 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
| TCONS_00030621 | other | downstream | 693080 | 11756924 ~ 11764998 (+) | False | XLOC_015269 |
| TCONS_00030632 | other | downstream | 1312978 | 12376822 ~ 12378603 (+) | False | XLOC_015273 |
| TCONS_00030633 | other | downstream | 1330779 | 12394623 ~ 12394983 (+) | False | XLOC_015273 |
| TCONS_00030634 | other | downstream | 1337411 | 12401255 ~ 12404031 (+) | True | XLOC_015273 |
