RNA id: TCONS_00030611


Basic Information

Item Value
RNA id TCONS_00030611
length 539
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_015262
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11028923 ~ 11063878 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCATCATTAGAGTCCAGGCTAAAGGAGGATCTGCATGACCTTCATCTGGAGGATGGAGCTCAGCATCGCAACCCTTCAGAAGTGAAGATGAGCCAGATCGTGTTGCCCTGCCATGCCAACCACTGCGGAGAGCTGAGCGTCGGGCAGCTGCTCAAATGGATGGACTGCACAGCATGTCTGTCTGCCGAGAGACACGCTGGATGTCCCTGTGTGACAGCGTCTGTTGATGACATCTACTTCGAGCACACCATCGGggTTGGACAAGTGGTCAACATTAAAGCCAAAGTCAACAGAGCCTTCAACTCTAGCATGGAGgTGGGGATAGAGGTCAGCTGTGAAGACCTGTACAGGGGCCGTCATTGGAGAGTCTGTCAGGCGTTTGCCACATTTGTCGCCAGACGCACAGATGCAAACAAGccacaaccacgactactactactactgatactactacaacaatgactactactactgatactactacaacaatgactactacaGCGTCTACTACAattgatactactacaacaacatctt

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0006637 acyl-CoA metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0036042 long-chain fatty acyl-CoA binding molecular_function
GO:0047617 acyl-CoA hydrolase activity molecular_function
GO:0000062 fatty-acyl-CoA binding molecular_function
GO:0016790 thiolester hydrolase activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-538 Predicted to enable acyl-CoA hydrolase activity and long-chain fatty acyl-CoA binding activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Predicted to be active in cytosol. Is expressed in cloaca; lens; proctodeum; and solid lens vesicle. Orthologous to human ACOT11 (acyl-CoA thioesterase 11).

Ensembl:

ensembl_id ENSDART00000145093

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033489 lncRNA upstream 424035 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00033488 lncRNA upstream 466978 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00030592 lncRNA upstream 615092 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033487 lncRNA upstream 745735 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030570 lncRNA upstream 1192715 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00030612 lncRNA downstream 12249 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030616 lncRNA downstream 165396 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033490 lncRNA downstream 585935 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA downstream 585944 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA downstream 585976 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030604 mRNA upstream 99594 10914023 ~ 10931770 (+) True XLOC_015260
TCONS_00030603 mRNA upstream 150815 10878406 ~ 10880549 (+) True XLOC_015259
TCONS_00030601 mRNA upstream 173467 10821154 ~ 10857897 (+) False XLOC_015258
TCONS_00030613 mRNA downstream 76248 11119315 ~ 11126221 (+) True XLOC_015263
TCONS_00030614 mRNA downstream 162728 11205795 ~ 11210168 (+) False XLOC_015264
TCONS_00030615 mRNA downstream 163250 11206317 ~ 11208748 (+) False XLOC_015264
TCONS_00030619 mRNA downstream 627203 11670270 ~ 11677705 (+) True XLOC_015268
TCONS_00030620 mRNA downstream 642675 11685742 ~ 11833284 (+) False XLOC_015269
TCONS_00030605 other upstream 24574 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 825246 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 1048411 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 1155719 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 1189500 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030617 other downstream 200819 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 713857 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 1333755 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 1351556 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 1358188 12401255 ~ 12404031 (+) True XLOC_015273

Expression Profile

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