RNA id: TCONS_00030729



Basic Information


Item Value
RNA id TCONS_00030729
length 469
lncRNA type lincRNA
GC content 0.38
exon number 2
gene id XLOC_015346
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 18405569 ~ 18406117 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


attgaagaagatgcccagaagTGACATGAActtggagctgcttattgctctggtatCCAAACGAAAAATGCTGTATGATAAACGAGACATCGACTACAAAAATGTTGACAAAAGGGAAATGTTGTGGAGAGGAATTGTGGAAGAATTAGGAGTCGATGCTGAGGAGGTTAAACAGAAGTGGAAAGCTTACGTGATACATACACACGAAAAAAGCGTGAAGAGGGAGATTGTCGAAGTGGACAGGCCGCTAAAAGCAAGAAGCCGTGGAAGTACATAAAGGCAATGAAGTTCCTCGCAGCATCCACAGAATTTCGAAGTTACTCGCATCAGACAATTAAATTACATATTGTTGTCCTAtcagatgtaaaaaaaatctatagtaaTTTATTGTAACTACACCACCATAGTAAGGTAATTCAGTTAATCTGCTGTGATCAGTCTATAGTTtctattcacaataaaaaaaatc

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170152

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033512 lncRNA upstream 69858 18332793 ~ 18335711 (+) True XLOC_015345
TCONS_00033252 lncRNA upstream 70694 18332763 ~ 18334875 (+) False XLOC_015345
TCONS_00033251 lncRNA upstream 70694 18332763 ~ 18334875 (+) False XLOC_015345
TCONS_00030727 lncRNA upstream 690749 17707492 ~ 17714820 (+) True XLOC_015343
TCONS_00033250 lncRNA upstream 791699 17611447 ~ 17613870 (+) True XLOC_015341
TCONS_00030732 lncRNA downstream 582304 18988421 ~ 18990519 (+) False XLOC_015348
TCONS_00030733 lncRNA downstream 584060 18990177 ~ 18990701 (+) True XLOC_015348
TCONS_00030741 lncRNA downstream 831246 19237363 ~ 19243344 (+) True XLOC_015351
TCONS_00030748 lncRNA downstream 1152957 19559074 ~ 19562491 (+) True XLOC_015355
TCONS_00033513 lncRNA downstream 1183927 19590044 ~ 19595194 (+) True XLOC_015358
TCONS_00030728 mRNA upstream 382804 18017000 ~ 18022765 (+) True XLOC_015344
TCONS_00030722 mRNA upstream 829964 17525355 ~ 17575605 (+) False XLOC_015339
TCONS_00030731 mRNA downstream 582290 18988407 ~ 18992350 (+) False XLOC_015348
TCONS_00030734 mRNA downstream 698114 19104231 ~ 19144467 (+) True XLOC_015349
TCONS_00030735 mRNA downstream 757848 19163965 ~ 19215112 (+) False XLOC_015350
TCONS_00030736 mRNA downstream 789724 19195841 ~ 19214637 (+) False XLOC_015350
TCONS_00030737 mRNA downstream 789854 19195971 ~ 19209691 (+) True XLOC_015350
TCONS_00030726 other upstream 747493 17657958 ~ 17658076 (+) True XLOC_015342
TCONS_00030715 other upstream 1575805 16829689 ~ 16829764 (+) True XLOC_015330
TCONS_00030714 other upstream 1580750 16824759 ~ 16824819 (+) True XLOC_015329
TCONS_00030677 other upstream 2244000 16160943 ~ 16161569 (+) False XLOC_015314
TCONS_00030675 other upstream 2537029 15868425 ~ 15868540 (+) True XLOC_015313
TCONS_00030730 other downstream 96191 18502308 ~ 18502424 (+) True XLOC_015347
TCONS_00030744 other downstream 1099173 19505290 ~ 19507193 (+) True XLOC_015352
TCONS_00030745 other downstream 1112968 19519085 ~ 19519182 (+) True XLOC_015353
TCONS_00030749 other downstream 1168942 19575059 ~ 19575156 (+) True XLOC_015356
TCONS_00030752 other downstream 1222580 19628697 ~ 19628794 (+) True XLOC_015360

Expression Profile


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