RNA id: XM_021601997.2


Basic Information

Item Value
RNA id XM_021601997.2
length 1278
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110523366
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18415774 ~ 18422258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCCTCGCACCAGGTTTCATTCCGGAATTTGTTTGAGGACACTCCAGTCACGTACTTCCTCTAAAATTCTGGCTTCGGGGAAAATAAACACCAAAGACCCAAGCCTTAAGTCAAAACGacgaaagaaaaacacatttgaaaCAACGAATTAAATCAAATAAGTATTGTACCCGAACACGTAACATTAAAGACACAAAATGCCCCAGAACGAACACATCGAGTTACATCGCAAGCGCCATGGCCAGCGCCTGGACcatcaggagaggaagaggaagaaggagagccGTGAGGCCCATGAGCGCTCACATAAAGCCAGGAAGATGATTGGTCTGAAGGCCAAACTCTACCACAAACAGAGGCACTCTGAGAAGATCCAGATGAAGAAGACCCTCAAAATGCACGAACAGAGGAAGACCAAGCAGAAGAACGACGACAAGACGCCTGAGGGAGCAGTACCAGCCTACTTgctggacagagagggacagtcaCGCGCCAAGATCCTCTCCAACATGATCAAacagaagaggaaggagaaggcTgGTAAATGGGAGGTGCCCCTGCCCAAGGTTCGGGCCCAGGGGGAGACGGAGGTGCTCAAAGTAATCCGTACAGGCAAGAGGCAGAAGAAGGCCTGGAAGAGGATGGTGACCAAAGTGTGCTTTGTAGGTGACAACTTCACCCGCAAGCCTCCCAAATATGAACGCTTCATCAGACCCATGGGTCTACGCTTCAAAAAGGCCCATGTGACCCACCCGGAGCTGAAGGCCACATTCTGTCTCCCCATCCTGGGTGTGAAGAAGAACCCCTCGTCACCCCTCTACACCACCCTGGGGGTCATCACCAAGGGAACCGTGGTAGAGGTCAACGTCAGCGAGTTGGGCCTGGTAACGCAGGGGGGAAAGGTCATCTGGGGTAAATACGCCCAGGTGACAAATAACCCAGAGAACGACGGCTGCATTAATGCTGTACTGCTGGTGTAAAATGAAGAACTCTATGGGAtgttttcccagacacagattaagcctagtacTGGACTAAAGCATTTATGGAGACTCTCCATTGACCTTGTTTAATAGTCCAGgaataggcttaatctgtgtccaggaaaccgctCCTCTATACAGACGGGCCTGTAACATACAGCCAGAGTTGGGGCTGGCATGGAATATCAGACATCTGTGGTTAAACCGTATGATGGAGAACATCAGATGGCATATTTTGCAACAAGGTGTCTCGTAACTAAATTCTGGACTGTGACTAAAAGTGTTTGTCAAATA

Function

GO: NA

KEGG:

id description
K14842 NSA2; ribosome biogenesis protein NSA2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425696 lncRNA upstream 29011 18383161 ~ 18386763 (+) False G374438
TU425726 lncRNA downstream 19962 18442220 ~ 18442478 (+) True G374463
TU425755 lncRNA downstream 59073 18481331 ~ 18481568 (+) True G374488
TU425757 lncRNA downstream 62010 18484268 ~ 18484500 (+) True G374490
TU425758 lncRNA downstream 64127 18486385 ~ 18486613 (+) True G374491
TU425759 lncRNA downstream 64778 18487036 ~ 18487244 (+) True G374492
XR_002473438.2 mRNA upstream 5648 18396328 ~ 18410126 (+) False LOC110523365
XM_021601996.2 mRNA upstream 5648 18396331 ~ 18410126 (+) False LOC110523365
XM_036976990.1 mRNA upstream 5648 18396655 ~ 18410126 (+) True LOC110523365
XM_036976985.1 mRNA upstream 238739 18067350 ~ 18177035 (+) False arhgef28a
XM_036976986.1 mRNA upstream 238739 18067350 ~ 18177035 (+) False arhgef28a
XM_021602001.2 mRNA downstream 65362 18487620 ~ 18506142 (+) False egfl7
XM_021601998.2 mRNA downstream 65376 18487634 ~ 18506142 (+) False egfl7
XM_021602002.2 mRNA downstream 65377 18487635 ~ 18506142 (+) False egfl7
XM_021601999.2 mRNA downstream 66609 18488867 ~ 18506142 (+) False egfl7
XM_021602000.2 mRNA downstream 66609 18488867 ~ 18506142 (+) True egfl7
TU425343 other upstream 332409 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 708017 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 1533589 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 1533589 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 1677274 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 1561003 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 2169222 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 2321326 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 2409000 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 2685911 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile