RNA id: TU423600


Basic Information

Item Value
RNA id TU423600
length 7319
RNA type TUCP
GC content 0.43
exon number 2
gene id G372618
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16870434 ~ 16882185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTTGATATCAACCCAAGGCATATTATCCCTAATTAAATTGCATCATTACATTTTGCCATAAAGGACCAAGGCAATGTGGCAGAGTGAATCCTGCGGTTTATAGACAGTCAAAGACCCAGCTGTTATGTAAAGGGTCTCACCCGCATCTCTCTGGCTCTGGCGGCCTGGCACCGCAGTGTGGACAACAGTGGGTCTCAGTTCAATTTAAGTTTCAACCAAAAGACCCTGTCtaaaggttgttgtttttttagatGGGATTCAGAGTTGAAGACCACTCAACCAAACCAAAGATGTGCATGATGTGGTAACGTCTGTGCTCAGTGGAAAAGCAGATGGATAGTCGATGGTTATTCGTGTCACTGAGACAGTTGCAGTCAGTGTTACTGATGCAACTCACCGCTGGCGGTCACTGGTAGATGTGACTATGAGCTGATTGTCTCTCAATCTCTTAAGGGATGGATGGGTCAAAAACAAAGGGTGGACAACAACGACATCAACAAATATCAACAACAAAACGTGTTAAAGTTTTATGCTCCACGTGCATTTTTAAACAGACTAAAATATGAATAATAAAACAATTTAGGCTAAAAGGCTAGCTTAATGATTGAAATAATCTAATctcttataaaaaaaaataaacctaTGCTTTAGGCTATTCAATTTGTGCGTACCAGTTTTAAATATGTCACCGTGTAGTAGCCTAGTGAGGTAGATGTGACTTAATTCTCTGCTGATCcatgattttaaaaaatccaaTTACTTTTCCGTGACCTAGAGCTACGTAACAATAACACGATACTGTAGAAATCACGGTTGTGTTTTATCCAATGATAGTAGTTTTTATGCGATCTTAtattgccatctagtggacaaaaaCGGAAAATCCCTGATTGGGAAGCGCTTTTAAAATAGAATAGTCAAATAACATTTATTCTTCAAAAAAATAATCATGGTAGAagaacatttaaaatgtcatgatTCTACAAAATTTGAATATTCTGAATATAATTCTGATCAAGAAACATCTTAAACATTTTCAGGATTCAACTTGCATTTTGAAAATAAAGATTTTACGATTATGAGAGATAGCCTTTCTAGAATGACTGATCTATTGACAATGAGTGCATCTGAACATTGTGTAAGAATCATCTCTTTAGGGTTGCTATAATAGTAAAACAACCTATATATGTAGCCTATCTATCAGCTGTCAATTAATACAATTGTTAATGAAACTGTTAATGAGAGGCATCGTTAGTGAAAACACTAAACTATATTCATTGCTCCACTTCATAATCATTCCTTCATTCCTTCCACATGCACCGTTTGTCTTTTTACATTGAACTAATGTAGCCTAAATAACAAAGTGTCTTTTCTGTGCTGAAAACTGTCGCTATTCCGTTCACACAATACTATAAAAAAAAGACGTATAGTCGTAACTCAAACCTAACATGACTCTTGTACAAAATGCTTGTACAGATCCTTTTTTCTAGAAAAGCATTGGAAAATGTTCTGTCGTAATAGCTAATGCTCATAACTGAGAACAGTGGTGTTTAAACTGCACTGTATACTCTATGTTGCTTTCTTCACTCCCCCAGATCTCATattcgtgtgtttgtgtgatgcCAGATGTCTGGCCCCTCTCTCCTGgggctctgtgtctgtctgtcagtacgtgtgtgtgtgttgtgtgtgtgtgttactccaGCTTTCCATCCCCTCTGACACTCCTAgggctctgtgtctgtctgtcagagagggtggaggaggcgatgaagggagaagggggaggaggagagggagagaggaatggagggatgtggggagatagagggaaggaggaaggaagatggacgagaagagaggaggggaggtgttACTCCACGTGACATCTTTAccagggctgcatctcaatagtgtaaagtggcttcctctccttcatctgcactgatctgaaatCACCACTGGGTAGGAGAAATCAATATGGAAGACACCCATGTCAGTTTGGGGTCAGGGTTTAACTCTAGTGTGTTTGGTCAgacttaaagctggaatccttaatggtgaaactgccacgttccgtttgggatattacaacaacaaaggagTTACTACAAACAACAAACACCGTTGTTTTCCCTCAGGCATCATTGCATGAGAGATAGAACACAGTAAGTACTgcagattttttgtttgtttcagcaacaaaaacaacaaaggcGAACAGTAACACTGTTTCACCTTATGCGGATTTCAGCTTTAAGGTCAAAGATTACAGCCAGGTTCGGgaggtaaggtaagggttagaggtcagtTGTCAGAGTTAAAGGTTGGTTACCTGAGGATGCTGCTGGGGGTGGTGATGTCATACTCCAGTGTGAAGGCGGAGCCTCGGCTGATGGTCACACTGTTGTCGTACTGGACCTTGACCATATTGTCCTGAACATAGTACGACCTGGGCACCGTACCGCCGTAGTTTATCTACCACCACAGCACACACATCAattcatgcacaaacacacacacacaaacatctctctctctctctctctctctaacaatgTGTAAAGGGAGAATAGATCAACattaatatgggttgtatttacaatggtgtttgttcttcactggctgcccttttcttgtggcaacaggtcacaaatcttgctgctgtgatggcaaactaaagtatttcacccaatagatatgggagtttatcaaaattggatttgtttttcgaattctttgtgggtctgtgtaatctgaggcaaatatgtgtctctaatatgtgcatacatttggcaggaggttaggaagtgcagctcagtttccacctcatcttgtgggcagtgtgcacatagcctgtcttctcttgagagccaggtctgcctatggcggcttctctcaatagcaaggctatagcAAGagtctgtggtcactaaagatcccatggcacttatcgtaagagtaggggtgttaacccggtgtcctggctaaattcccaatctgaccatcaaggtcacctaatcatccccagcttccaattggctcattcatccccttcctctcccctgtaactattccccaggttgttgctgtaaatgagaatgtgttctcagtcaacttacctggtaaaataagggttaaataaaacaacaacaaaaaacacttaTTGCTTTCCTTAAttctgggtcagtcacagtggacaggtattctgccacggtgtactctctgtttagggccaaatagcattctagtttgctctgttttttggtaaattctttccaatgtgtcaagtaattatctttttgttttctcatgatttggttgggtctaattgtgttgctgtccaggGGCTCTGTGGGGACtctttgtgaacagagccccaggaccagcttgcttaggggactattctccaggttcatatctctgtaggtgatggctttgttatggaaggtttgggaatcgctttcttttaggtggttgtagaatttaaaagCAATTTTCTGGTATCAGCATAGTTCTGCTCTgcatttggtgttttacgttgtacaagGAGGATATTTTATTATCAAAATaatgcatgcagtctcaatttggtgtttgtcccattttgtgaattcttggttggtgagcggaccccagacctcacaaccataaagggcaatgggttctttaactgattcaattatttttagccaaatcTTAATTGGATGTCAAATTTGAtattccttttgatggcgtagaagtcccttcttgccttgtctctcagatcgttcacagctttgtggaagtcctcgctccctccctccctctttctcaccaTGGTTCGACAGCGAGGGTCACCATCAGGGTCAGTAAGGGTTCCTCCGTACGCCACCGGGAGTTGCTCCGGGTCAATGTGCTTAAGTAACACCTCCTGCCAGTTAgctagagacggagagagggggaaaagagagagaaagacaggggaggttTAAATGTTTGTTACAGCTGTACACTTGGCCCACCACCACCTGATGGCGAGAAGTGACATCTCAAAACGATAcagaccagggctctccaaccctgttcctggacagctaccctcgtgtaggtttttgctccaactgttgttactacctgttgtaactaacctgattcagcctATCAACCAattagattagggttggagtaaaaatctacaggacggtagctctccaggaacagggtagtATAGCCGTGGACTAGACAGACACATACCATATCAAAGAGCAATATTAGGTGATATTTTCTCATTTACAGAAACCATATTCCAATAGTCCATATTGATAAGAAAAATACCTCACATATACTGTACCTGCTCCCTAGCGTGTAGTATATATAGGAACACAGTACTCACATCCCAGAATGATGATCTTGTGACGTGTCTCTTCACTCAGGAAGTGTTTGACCAGGTTGTAGGCCATCGGGAATAGCTTAGgagctgcagggagagagaggcactaTAAATACACACCCGGACGCACGCAcaacacaggaggctgctgaggggaggacggctcaaaagaattctgctccagccattaccacaagcctgtcctccccaattaaggtgccaccaacctcccgtGACATTTTATTGACATAGATATTGTAAGACATAGATCGTAAGACAtagataccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcagaatcTAGATGACTCACTCTTGATGAGAAACACCCTCTTGAGTCCTTCAGGATAGTTCTCCTCAAACATGGTAAGAATCTGCAACAGTATTAGCGagggacagccagccagccaacagaCAGACAACAGCCAGCCATACAAtggccacacagacagacagccagcaaGACAGacaacagccagccagacagacaacagccagccagacagacaacagccagccacacagacaacagccagccagacagacagacaacagccagccagacaacagccagccagacagacaacagccagccacacagacaacagccagccagacagacaacagccagccagacagacacttTGTTTTTCAGACATGTCTATTCATGGTGGTCTCACCCATAGAGATGCATAAACACTAAAAGATGAGGGTTCCCCAAGGGATCTTTAGGAAGGGTGATGGTTCTATGTGGAGCCATAATTACTCAAATAACCCTTTAAATTCTGTTCTTCAATGGTTCTTTAAAGTtcacaaaagggttctttgcTTTGGTTCTTTTGCGAGGTGGCTCAttagaatatatataatataatatgactgACCAGAATAAAAACCTGTATGGTTCTTCTACAGGATCTACAAAGAACCTTTCAGATTGAGAAAGGttttttataaactcagcaaaaaaagaaacgtccctatataattcataaaaatccaaataacttcccacatcttcattgtaaagggtttaaacactgtttcccatgcgtgttcaatgaaccataaacaattaatgaacatgcacctgtgggacAGTAgtcaagacactaacagcttacagatggtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggactttctactgactctgaaaaacaccaaatgaaagatgcccagggtccctgctcatctgcgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccatacagtgagatgcctaagacggcactacagggagacaggacggacaactgatcgtcctcacagtggcagaccacgtgtaacaacacctgcacaggatcggtacatccgaacatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaacacacaatccctccatcagtgctcagactgtctgcaataggctgagagaagctggattgagggcttgtagacctgttgtacggcaggtcctcaccagacaacactggcaacaacgtcgcctatgggcacaaacccaccgtcgctggaccagacaggactgtcaaaaggGGCTCTTCactgtctcaccaggggtgatggtcggatttgcgtttatcgtcgatggaatgagcgttacatcgatttggaggtggagggtccgtcatggtctgggacggtgtgtcacagcatcatcggattgagcttgctgtcattgcaggcaatctcaatgctgtgtgttacagggaagacatcctcctccctcatgtggtatccttcctgcaggctcatcctgacatgaccctccagcatgacaatgccaccagccatactgcttgttctgtgtgtgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagcctggatctaaatcccattgagtacgtctgggacctgttggttcGGAGGGTAAGGGCTAGGACtatttcccccccagaaatgtctgggaacttgcaggtgccttggtggaagagcggggtatcatctcacagcaagagctggaaaatctggtgcagtccttgaggaggagatgcactgcagtacttagtgcagctggtggccacaccagatactgactgttacttttgattttgacccccaccctttgttcagggacacattattcaatttctgttagtcacatgtctgtggaacttgttcagtttatgtctcagttgttgaatcttgttatgttcaaacaaatatttacacgtgttaagtttgctttaaataaatgcagttgacagtgagaggatgtttctttttttgctgagtttagaacccTACTACATAACGTTTCCATAAAGAACCATAAAACAGGGTTCTATATAACCCCAAAAGGGTTGTAACCATAGCAGAATCCGtttttggtgctatatagaaccttttttaatgattctttatagaaccttgggaaagggttctttataacaccatacaggttccatttagaacaTGATGGGCATGGTTCTTTATTAAACCTTCAAAAAAGGGTTGtatatagcaccaaaaagggtGCTGCTATGGTTACAAGCCAAAGAACCCATATCTGGTACTATTTAGAACCATTATGTGTATATATTATGTTCTAATCTATTTAATTCAGTGGGCTCACCTCTCCATAGGCCTCTAAAGCAGGCTTCCACAGGTGCTTCAGGCCCAGTCCCTCACAGTCATAGATCAGGGTTATCGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423607 lncRNA upstream 1370 16868670 ~ 16869064 (+) True G372621
TU423598 lncRNA upstream 3930 16866270 ~ 16866504 (+) True G372617
TU423593 lncRNA upstream 14951 16855129 ~ 16855483 (+) True G372612
TU423591 lncRNA upstream 15984 16854229 ~ 16854450 (+) True G372610
TU423587 lncRNA upstream 29400 16840489 ~ 16841034 (+) True G372606
TU423669 lncRNA downstream 76812 16958997 ~ 16982145 (+) True G372664
TU423683 lncRNA downstream 105014 16987199 ~ 16987399 (+) True G372676
TU423687 lncRNA downstream 108627 16990812 ~ 16991929 (+) True G372680
TU423696 lncRNA downstream 114831 16997016 ~ 16998461 (+) True G372683
TU423698 lncRNA downstream 122199 17004384 ~ 17005069 (+) True G372684
XM_021601952.2 mRNA upstream 126367 16741353 ~ 16744067 (+) True purbb
XM_036976947.1 mRNA upstream 135305 16732636 ~ 16735129 (+) True ved
XM_036976935.1 mRNA upstream 144425 16712182 ~ 16726009 (+) False polm
XM_036976936.1 mRNA upstream 144425 16712184 ~ 16726009 (+) True polm
XR_005051667.1 mRNA upstream 177004 16690905 ~ 16693430 (+) False LOC110523336
XM_021601959.2 mRNA downstream 67217 16949402 ~ 16967809 (+) True LOC110523342
XM_021601962.2 mRNA downstream 113209 16995394 ~ 17012011 (+) False st8sia5
XM_021601963.2 mRNA downstream 113211 16995396 ~ 17012011 (+) True st8sia5
XM_036976540.1 mRNA downstream 137402 17019587 ~ 17071539 (+) False LOC110522812
XM_021601970.2 mRNA downstream 237602 17119787 ~ 17125777 (+) True atp5fa1
TU423245 other upstream 131934 16735642 ~ 16738500 (+) True G372373
TU423147 other upstream 649501 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 1075312 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1741617 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1816878 15048178 ~ 15053556 (+) True LOC110519479
TU424889 other downstream 821928 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1185258 18067443 ~ 18083365 (+) True arhgef28a
TU427802 other downstream 3101076 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 3709295 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 3861399 20743584 ~ 20758501 (+) True LOC110522816

Expression Profile