atp5fa1 (LOC106569424)


Basic Information

Item Value
gene id atp5fa1
gene name LOC106569424
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17119787 ~ 17125777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601970.2
TTTCCGGTTCACAGTATAATTTTTTACCCTGTCCTCCATCTTCTTTACGTGATTTAACCAGTAGGTGTAGTTGGACAAATCCGCGTAGAAACATTAATAGCTATGCTGTCAGTTCGCGTTGCCGCGGCCCTTGTCCGCACCCGGGCTGGATTTGTTTCCAAAAATGTTTATGCTGCTGCATGTGTAGGAGCCAGGCACCTGCACACCACAAAGCCATGGATGGCCAAGACGGGAACAGCAGAGGTCTCGTCCATTCTGGAGGAGAAGATCCTGGGGGCTGACACTAGCGCTGACCTGGAGGAGACTGGTCGCGTGCTGTCCATCGGTGATGGTATTGCCAGAGTGTATGGTCTCAGGAACGTGCAGGCTGAGGAGATGGTGGAGTTCTCCTCCGGGCTTAAGGGCATGTCTCTGAACTTGGAGCCTGACAATGTCGGTGTTGTGGTGTTCGGTAATGACAAGCTCATCAAGGAGGGCGATATTGTCAAGAGAACCGGAGCCATCGTGGACGTGCCAGTCGGTGAACAGCTGCTGGGTCGTGTGGTGGACGCTCTGGGAAATGCCATCGACGGCAAGGGTCCCCTTGGGTCCAGCATCCGTAGGCGTGTGGGTCTTAAGGCCCCTGGCATTATCCCCCGTATTTCTGTGAGAGAGCCCATGCAGACTGGCATCAAGGCCGTGGACAGCCTGGTGCCCATTGGCCGAGGTCAGCGTGAGCTGATCATCGGTGACAGGCAGACTGGCAAAACCGCCATTGCCATCGACACCATTATCAACCAGAAGCGCTTCAACGATGGCACTGATGAGAAGAAGAAGCTGTACTGCATCTACGTCGCCATTGGTCAGAAGAGATCCACCGTGGCCCAGCTAGTGAAGAGGCTGACTGACGCCGACGCCATGAGGTACACCATTGTGGTGTCCGCCACAGCCTCCGATGCCGCTCCCCTGCAGTACCTGGCCCCttactctggctgctccatgggAGAGTTCTTCAGAGACAATGGCAAGCACGCGCTCATCATCTACGACGATTTGTCCAAGCAGGCTGTGGCTTACCGTCAGATGTCCCTGCTGCTACGTCGTCCCCCCGGTCGTGAGGCCTACCCCGGGGATGTGTTCTATCTCCATTCTCGTTTGCTAGAGAGAGCAGCCAAGATGAACGAAAACTTCGGAGGCGGCTCCCTCACCGCCCTGCCCGTCATTGAGACCCAGGCCGGTGATGTTTCCGCCTACATTCCAACCAATGTCATCTCCATCACAGACGGACAGATATTCTTGGAGACTGAGTTGTTCTACAAAGGTATTCGACCAGCCATCAACGTAGGTCTGTCTGTGTCACGTGTCGGCTCTGCCGCCCAGACCAAAGCCATGAAGCAGGTGGCTGGTACCATGAAGCTGGAGCTGGCCCAGTACCGTGAGGTGGCTGCCTTCGCACAGTTTGGTTCTGACTTGGACGCTGCCACCCAGCAGCTTCTGAACCGTGGTGTTCGCCTTACTGAGCTCCTCAAGCAGGGGCAGTACTGCCCCATGGCCATTGAGGAGCAGGTTACAGTCATCTATGCTGGTGTGAGGGGACACTTGGACAAAATGGACCCAACCAAGATCACAAAGTTTGAGAAGGCTTTTCTTCAACATGTTCTCAGCCAGCACCAGGATCTCCTAGCACAAATTAGAGCTGATGGCAAAATCTCAGAAACCGCAGATGCCCAGCTTAAGCAGATCGTCTTGACCTTCCTGGCAAGCTTTGAGTAGTCTTATTTTTGGTCAACTATTTTGTCAATGTTTGCATAGTGCGGATGTTAAACTTTAAAAACAAATCTGAAAATAAAGTGCCATTTGATATTACTGTACAGATGTCTCCTAACAGAGAATAAAGTCTTTCTACTCCAGGA

Function

NR:

description
ATP synthase subunit alpha, mitochondrial

GO: NA

KEGG:

id description
K02132 ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601970.2 True 1892 mRNA 0.53 11 17119787 17125777

Neighbor

gene id symbol gene type direction distance location
LOC110522812 loxhd1 coding upstream 48248 17019587 ~ 17071539 (+)
st8sia5 st8sia5 coding upstream 107776 16995394 ~ 17012011 (+)
LOC110523342 LOC106569363 coding upstream 151978 16949402 ~ 16967809 (+)
purbb LOC106562912 coding upstream 375720 16741353 ~ 16744067 (+)
ved LOC106569620 coding upstream 384658 16732636 ~ 16735129 (+)
LOC100136246 LOC106569430 coding downstream 579 17126356 ~ 17147778 (+)
LOC110523352 LOC106569472 coding downstream 65639 17191416 ~ 17217186 (+)
LOC110523353 LOC106569485 coding downstream 110035 17235812 ~ 17242911 (+)
tnpo1 LOC106569531 coding downstream 601744 17727521 ~ 17778710 (+)
LOC110523357 LOC106569536 coding downstream 666083 17791860 ~ 17871592 (+)
G373109 NA non-coding upstream 7114 17112458 ~ 17112673 (+)
G373075 NA non-coding upstream 9294 17071632 ~ 17110493 (+)
G373090 NA non-coding upstream 50362 17069181 ~ 17069425 (+)
G373073 NA non-coding upstream 74550 17045014 ~ 17045237 (+)
G373125 NA non-coding downstream 23279 17149056 ~ 17149268 (+)
G373128 NA non-coding downstream 26168 17151945 ~ 17152244 (+)
G373132 NA non-coding downstream 32533 17158310 ~ 17158643 (+)
G373133 NA non-coding downstream 32929 17158706 ~ 17158963 (+)
G373135 NA non-coding downstream 35490 17161267 ~ 17161493 (+)
G372618 LOC105030512 other upstream 237602 16870434 ~ 16882185 (+)
G372373 NA other upstream 381287 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 898854 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 1324665 15791559 ~ 15795122 (+)
G371182 NA other upstream 1990970 15124290 ~ 15128817 (+)
G373726 NA other downstream 578336 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 941666 18067350 ~ 18177035 (+)
G376320 NA other downstream 2857484 19983261 ~ 19983848 (+)
G377022 NA other downstream 3465703 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 3617807 20508074 ~ 20759255 (+)

Expression


Co-expression Network