LOC110522812 (loxhd1)


Basic Information

Item Value
gene id LOC110522812
gene name loxhd1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17019587 ~ 17071539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976540.1
ATGCCCTCAAAAGAGAAAAAAACTGCAGGAACGGAGGAAACTGAAGAGGTGGTTTGCGACGTGGAGGAAAAGGAGCCAAAACCGAAAGGGAAGAGCAAGTCTGACGCCAGCGGAGACACCAAGCCAGACGGAGCGAAGAAGAGGAAGAAACACAAGAGCCCAGAGGAGTCTGACGAGgatccagagaaagagaggaagaagaaaggGGAACGCCACGATAAGGtgaaagagaaaaaagaaaagaagaaaaagaaagcaGAAGATGAtgcagagaagagggagggggatgaAGTGATTGAAAatgaggaagagggagatgacGAGCAGAACAACAATGACACCATCGAAACCAAACCCAAGAAGAAGAAATCCGAAGAAGAGGACATGACTGAGGGAGAACTTAAGgaggaaaagaagaagaaaaagaagtcGTCTTCTGAGGgagaccaacagggagaggaggagatggggtcCAAAGGCAGGAAGTCCACAGATggagggaagaagaagaagaaagctCAGGATGAGGATGATGAGGACAAGAAAGACAAGAAAGGGAAGAAAGGGAAGAAGCCCAAGGCCAAGCAGGTGGATTACGCTGAGATCTACTACAATGAGCTGATGACCTACCAAACGGACTCCTCCGATGGCTATGAGGAAGAGTACCACAAAAAGAAAGtgtatgAGGTGGTGACTGTCACAGGTGATGTGAGAGGGGCAGGCACAGACGCCAATGTGTTTGTCACTCTTTTTGGAGACTTTGGCATCACTCCCAAAGTGCACCTGGCCAGCAAAAGCCGAACGGCATTTGAGAAAAATAAGACGGACGTGTTCCGgattaaaacacacaatgttGGGCCCTTGAAGAAGCTGAGGATTGAACATGACAACACAGGTGGCTTGAACGCCAGCTGGTTCCTGGACCGGGTCGTGGTGACCGACATGAACCGTCCACACCTGCGGTTCTACTTCGCCTGCAACAACTGGCTGAGCCGTGAGGAGGGGGATGGCCTGTATGTCAGAGACCTGCTGGGCAGCCTCAACCCCATGGATGTCCCCAAACTGAATAAGTACATAGTGAGTGTGTTCACTTCTGCTGAGAAGGGCAGCGGGACTGATGCTGACGTCTTCCTGAATATCTTTGGAGAGCATGGCGATACAGGGGAGAGACGGCTGGACAGTGACAAAGATAATTTTGAGCGAGGCACGGAGGACAAGTTTACTATTGAATCACCAAACCTGGGAAGGCTAAAGAAAATCACCATTGGCCATAACAACAGGGGCTCATCAGCTGGATGGTGTCTGgataagGTGGTCATTGATGACATGGGGAACAAGGAGGTGTATGAGTTTCCAGTGAATCGCTGGTTCGCCATGGATGAAGAAGAtggaaagatacagagagatgtgttggtgggagcaACACAGCCCATGGCGGTGGTGTACAACGTCCAGGTGATGACGGGCAACGTGAGAGGTGGTGGCACCAACTCTAAGATCCACATCATCATGCATGGCACCAAGGGCCTGAAGAACAGTGGCAAGGTGTTCCTGGAGGGTGGAGCATTCGAGCGGGGGCTCATCGATATCTTCAACGTGGAGATTGCTGCCCTGCTCAGCCCACTCAGTAGGGTCACCATCGGACATGACAACGGAGCTGTTGGGGCCGGCTGGTACTGCGAAAAGGTGACAGTGTACTGCCCATTCACAGGGATTGAGCAGACGTTTCCCTGTTGCAAGTGGCTGGATGAGGACGAGGGGGACGGACTGATTGAGAGGGAGCTTTACGAGATGGTGTCCCTCAGGCAGAAGAAACTTAAGAAGTACCCGTGGTCACTGTGGATCTGGACATCGGACGTGAAGGGGGCAGGGACGGACGCCCAGGTCTTCCTACAGATCTACGGTGAGAAGGGCAAGTCAGATGAGATGAGACTGGAGAGCAACTCAGACAGCTTTGAGCAGGCTCAGCTGGATAAGTTCATGATTGAAATGCCAGACATCGGAAAGCTGACGAAAGCCCGTATCTGGCACGAAAAGAGACATCCTTTCGCAGGCTGGCATTTCGCTAGGGCCACGGTGATGAAGACTCTGACAAGGGAGAAGTACTCGTTTAACTGTGGCCGCTGGCTGGACATCAATGAGGATGATAATGAGATCATCAGAGAGCTGCCCGCCACCGGAGCTCTCATCCCGGAGCCGTTACTACTGCTGAAGTATCGCATCACCATCTGTACTGGGAGAGTGAGTGGAGGTGGCACTGATGCCAGCGTATTCCTTAATGTGATCGGGGACCTGGGAGACACAGGGGATCGACTCATGTTCCTCAGCAAAAACAACGTCAACAAGTTTGAAAAGGGCAACGCCGATGAGTTTCTGACCGAGGCGGTGTCGTTGGGGCAGGTGCGCAGGGTGCGTATCGGCCATGATGGGAGGGGTGGAGGCTGTGGTTGGTTCCTGGATAAGGTGTTGGTCAGGGAGGAGGGCCAACCAGAGTCTGCGGCCATAGAGTTCCCCTGTAACAGGTGGTTGGACCGGAATGAGGACGATGGACAGATCGTTCGTGAGTTAGTGCCAGCAGGAGATGGTCTGCGTCTCCACAATGTCAACTACCATATCTCGGTGAAGACAGGCAACATCAACGGGGCCAGCTCGGACTCCAAGGTGTTTGTTAAGTTGTACGGAGAGAAGGGCGACACCACGAGGATACTCCTGGTGGTCTCGGACAACGACCTGAGTAACTACTATGAGACGGGCCAAACTGATATCTTCACCGTCGAGACCTATGACATCGGACAAATCCACCGTCTTCTGATAGGCCACACTAACGAGGGTCTGCGGGCTGGTTGGTTCCTGGACAGTGTCCAGATCATTGTTCCGGTCCATGGGAAGCAGTACCAGTTCCCCAGCCATCGCTGGCTGTGTAAGGATGAGGCTGACGgcaaggtggaggtggagatctATCCCAGCGAGACCCTGGACATCGAGAAACTGATTAACTACGAGGTCACAGTGGTCACGGGGAACATGCGCAATGGTGGCACCAACGCCAATGTGTTCTGCCAGATCTACGGAGAGGAGGGCAAGACCGAGCTCATCAGCCTCAAGAGCCGCTCCAACAACTTTGAGCGCGGGACCACAGAGATCTATAAGATCGAGGCGCTGAACGTGGGCAAATTATTCAAAATCCGCATCGGGCACGATGGTTCGGGCGTGGGCGACGGGTGGTTCCTTGAGACGGTGGACATCAAGCGGCTCACTATGGCCATGGTACAGAGGGAAGTGGTGAAGGAGAAACCAAAGGATGACAAGAAGGACAAGAAGAagaataaaaaaaagaagaaagaagaggatgaggaggaggagtacGTGACGGAGCTCCAGGAGGTGACAGAGAGCGTGACGTTCCCCTGTCATCGATGGCTGGCCCGCGACGAGGAGGACGGGGAGATCGTGGTGGAGCTCCTACCCGAGGACCCCGGAGACCTGGAGGAGAACTCCTATGAGGTCCATGTGTTTACTGGCCCCATGTGGGGAGCCGGAACCGATGCCAACGTGTACATCAACATCTACGGAGAGATCGGTGACACGGGCGAGCGGAAACTAAGAAAGTCCAACAACCTCAACAAATTTGAGAAGGGGCAGGAGGACGTGTTCTCCATGCAGGCCATCGATCTGGGCATTCTGAAGAAGCTGAGGATTCGTCACGACAACAGCCAGCCTCATGCTGCCTGGTTCCTGGACAGGGTGGAGATAGTAGACAACAAAGACGACACCacGTACTACTTCCCATGTAAACGGTGGCTGGCCATCGATGAAGATGATGGACAGATTGCCAGGGAGCTGGTCCCTGTGGACGAAGCCTTTATGAAGAAgggtgaggatgatgatgatgatgatgacgaggaAAACTCCAGTGCAACACTCGGCCTGGAACAGAAggCCATGTCCACCACCTTCACAATGAGGGTAAAGACTGGAGACAAGAAGTATGCGGGCACTGATGCCAACGTGTTCGCCATCCTGTACGGCATGAAGGATGATACAGGCATCATAATGCTGAAAGCATCCAAGTTACATAAGAATAAGTTTGAGCAGGCCATGATCGATGAGTTTACAGTGGAAGCTGTGGACATTGGAACACTGAAGAAAATACGCATAGGGCATGACAACTCAGGGGCAGCATCAGGCTGGTTCCTGGACTGGGTAGAGGTGGATGCCCCCTCCCTGGGCCAGAAGCTGAGGTTCCCCTGTGGTCGCTGGCTGGATAAGGGAGAGGACGACGGGGCCATCGTCAGGGACCTCTTCCCTGCAGACCTCCAGACTGAGCTCTACACACCATTTGTGCCCTATGAGATCAAGACGTTCACCAGTGACCTGTTTGCAGCGGGTACAGACGCAGATGTGTTCATCGTGCTCTACGGCCGAGACGGGGTGTGCACCCAGCAGAGGTCTCTCTGTGTCAACAAGAGGGAGAGGACCATGTACTTTGAGAGGGGAGCTGAGGACATGTTCATCGTTGAGTTGGAGGACGTGGGTGATGTCATAGAGAAGATCCGTATTGGTCATGACAACAGAGGGCTAAACGGAGGCTGGCACCTGGACAGAGTGGAGATCAGACGACTGCTGAGGAAGGGGAAGGGGTCGGAGACTATTATCTTCCCATGTGAGCGCTGGCTGGCCAAGTCAGAGGATGAtggagaaacagtgagagagttAGTACCTTCTGACATCATAACGGAGAAACTACTACGAGATGGTACCCTGAAAGTCAGCGAGGTTGAGGTGGAAGATGCACTGGAGACTCACACTTACAAAGTGTCTGTGATGACGGGCGATGTTTACGACGCAGGCACCGATGCCAACGTCTTCCTGACCATCTACGGAGACCTGGGAGACACTGGCGAGCGCAAACTCAGCAAGTCTGAGACCAACGGCAACAAGTTTGAGAGAGGAGCGGTGGATAAGTTCACCATTGAGGCGGTGGACCTGGGTCAGGTGTTTAGAATGAAGATTCGCCATGACAACAGCATGATGAGTGCTGATTGGTACCTGGACCAGGTGGAGGTGGTTGACGAGGATACGGAGGAGGTCTTCCTGTTCCTGTGTGAGCGCTGGCTgtccagaaagagagaggacagacgcATCGAAAGGATGTTCTATGTCAAGGGTtacgagggggagagggagactatCCAGGGCAGTAAGAAGAGCTCAGCCCTGATCATGAAGAGTGTGGACAGCAACatgaacaagaagaagaagaagggggaggACGTCCAAAAGGAGAGCACcaTCATCCCATACCACTTCACCATTTCCACGGGGGAAGAAAACGATGCCAGTACCTGCAGCAGGGTCTATGTGATCATCATGGGGCCAAACCACACCCAGACACAGAGGCTGTGGCTGGACCTGCCTGGGGGGAAGAAGTGCTTTGAGTCTGGGTCTCTGGAGTCCTTCGAGGCTCATGGAGCTGATGTTGGTGAGATTAAAAAAGTGGAGCTCGGACATGACGGCGCCACTCCGGAGAGCTGCTGGTTGGTTGATGAGCTAGCTGTTGCCGTGCCAaccaaaggggttaaatacattttCCAGTGTAAGTGCTGGTTGGCCAAAGATCGGGGCGATGGACTGACTGCCAGGGTGTTCAACGTGTTGGATGCAGATAGCATCACCATCTCCCAAAAGATCATCTATGAGGTGACGGTGGTGACGGGAGATGTTCAGAACGCTGGGACAGACACCCAGATCTACGTGTCTGTGTTTGGGACCAACGGCACCACAGAGGAAATCCTACTGCAGAAGAACGAGGACAGGTTTGAGCGGGGTCAGGAGGACACGTTCAGCCTGGAGGTCGATGATATTGCTCCCCTGAGGAAGATGAGGGTCCGTGTTGACGGCTCTGGTAGCCGACCTGACTGGTTCCTGGCTAAGATCATCATGCGTAACCTGACCACAGAGGAGGTGTCAGTGTTCACCTATGAGGAGTGGCTGTCTAAGACCAAAGGACCCAAGAGGACCATGATCTGTGAGATGGCTGCTGTGGTGGAtgaggaggagatggtggagaTCACCACCTACATTATCCAGGTCAAGACCAGCGACATTGGagGGGCAGGCACTGACGCTAACGTGTGGATCATTGTGTTTGGAGAGTGCGGTGACACTGGGACCCTGGCGCTGAAAGAGTGCCAGAAATCCAACAAGTTTGAGCGCAAGCAGACAGATGTGTTCCGTTTCCCTGACGTGCTCAGCCTCGGGGAGCTCTCTAAGGTGCGGGTGTGGCACGACAACTCAGGGCCTGCTCCAGGATGGCACATAGAATACATTGATGTGAAGGATGAGGCCTTGGACAGGACATTTCGCTTCCCCTGCGACCGCTGGTTGGCTCAGAACGAGGACGATGGTCAGATCATGAGGGAGTTGTCCTGCGCCAACAACGACATTTTAGACCTCAACGAGAAGACCAAATATGAAATTATTACCACCACGGCGGACGCAGACGACGCAGAGACCAAAGAGAACGTCTGGATCGCACTGGAGGGGAAGAAGGGGCGTTCGAAAGAATTTATGATGGAGAACTCATCAAAGAAAAAGAGGTTCTTGCGGGGAAACAAGGACAAGTTTGAGTTCTCCTCCAAACAGCTAGGGGACATCGCTGGCATCTGCCTGGGCCACACCCCCAAGGATGGGAAGAAGGTGAAAGGTGAGGCGTTCTGGCACGTGAAGGAGGTCGTTGTCATAGAGAAAGTGCTGGGCAACAGGTTCATATTCATCTGCAATGCCCTGATCCCCCTCTCCCCGAAGAGGGACGAGTTTGTGACCATCGAGTGCACCAAGGCCATCGAGAGCTTCGCCAGCAAAGCCCGCAGCCTGGTGCCTGTCAAGTACGAGATCATCCTCATCACGGGCGACGAGAAGGGGGCAGGCACCGATGCCAATGTCTTCATCACCATCTACGGTTCCAACGGCGACTCGGGCCGCCGGTCGCTACGTCAGAAGTTCCGCAACCTGTTTGAGCGAGGCCAAACGGACCGCTTCCTGCTAGAGATGTTGGACATGGGTGAGCTgctgagagtgtgtgtggagcATGACAATACCCGCCTCAGCCCCGGCTGGCTGCTGGACCGCGTGGAGGTCACCAACACAGCCAACGGTGTCACCACCATCTTCCTGTGTGGAAAGTGGCTGAACACCAAGAAGGCGGACGGACAGATCTTCAGGGTCCTCTACCCAAAGTACTAAAGACCTCATATTGAGACTTCTCCACTATATGAAAACGTATGTCCTTTGCACAGCAGATGATAGAGGCCTCGCCGTGTGTTGGACTCTACCCAAGCAACTCCGTAATGAAGATATACAAACTCTTTGAATGGAGTTTGGATGTGGGCAACGGTttcattttaaaaatgttattgCCTCTATATGGTCATGATCTCAGGAAAGgaaaatgtttatatatttattactacATTTCTAGAATATCTTATAGTTTGGCTTTATTGCATTACTACTGAAGGCAAGTGGCCTGGCGTTTATGGCTAAAACACAATAGGGTCATAAGGCCAGGTAACATGATTGTGCCACCATTTTAAAAGTACCCATTATCAGGAATGGCATGTTGCTCAGCTGCTTGGTTGTAAATTAGGTTTTATAAGAGAGTATACTATTTTGTACTGCTTATTCCAAAACACTTTTTGTTTTTCAAAACTGCTTTTTAAGATTGTGGTTTGACTGATGTGTTCATCTCCCGGTGAGATTTCGATTACCTTGTGAAGACAGACTCAGAAAACAAATCAAAAGAGGATTGTCAACCTCATCAGGATGGAGATCATGTCTCATTCTCAATGAAAGCATTTTTTTTCATCCTTCTCCTCTAACTTCAAAGAGTCATAACTGGCCTTAA
>TU424152
CGGTGAAGACAGGCAACATCAACGGGGCCAGCTCGGACTCCAAGGTGTTTGTTAAGTTGTACGGAGAGAAGGGCGACACCACGAGGATACTCCTGGTGGTCTCGGACAACGACCTGAGTAACTACTATGAGACGGGCCAAACTGATATCTTCACCGTCGAGACCTATGACATCGGACAAATCCACCGTCTTCTGATAGGC

Function

symbol description
loxhd1 Involved in sensory perception of sound. Predicted to be located in stereocilium. Implicated in Fuchs' endothelial dystrophy; autosomal recessive nonsyndromic deafness 77; and orofacial cleft.

NR:

description
lipoxygenase homology domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976540.1 False 7906 mRNA 0.52 42 17019587 17071539
TU424152 True 200 lncRNA 0.53 2 17045538 17046001

Neighbor

gene id symbol gene type direction distance location
st8sia5 st8sia5 coding upstream 7576 16995394 ~ 17012011 (+)
LOC110523342 LOC106569363 coding upstream 51778 16949402 ~ 16967809 (+)
purbb LOC106562912 coding upstream 275520 16741353 ~ 16744067 (+)
ved LOC106569620 coding upstream 284458 16732636 ~ 16735129 (+)
polm LOC106569276 coding upstream 293578 16712182 ~ 16726009 (+)
atp5fa1 LOC106569424 coding downstream 48248 17119787 ~ 17125777 (+)
LOC100136246 LOC106569430 coding downstream 54817 17126356 ~ 17147778 (+)
LOC110523352 LOC106569472 coding downstream 119877 17191416 ~ 17217186 (+)
LOC110523353 LOC106569485 coding downstream 164273 17235812 ~ 17242911 (+)
tnpo1 LOC106569531 coding downstream 655982 17727521 ~ 17778710 (+)
G372685 NA non-coding upstream 2984 17016400 ~ 17016603 (+)
G372684 NA non-coding upstream 14518 17004384 ~ 17005069 (+)
G372683 NA non-coding upstream 21126 16997016 ~ 16998461 (+)
G372680 NA non-coding upstream 27658 16990812 ~ 16991929 (+)
G372676 NA non-coding upstream 32188 16987199 ~ 16987399 (+)
G373075 NA non-coding downstream 93 17071632 ~ 17110493 (+)
G373109 NA non-coding downstream 40919 17112458 ~ 17112673 (+)
G373125 NA non-coding downstream 77517 17149056 ~ 17149268 (+)
G373128 NA non-coding downstream 80406 17151945 ~ 17152244 (+)
G373132 NA non-coding downstream 86771 17158310 ~ 17158643 (+)
G372618 LOC105030512 other upstream 137402 16870434 ~ 16882185 (+)
G372373 NA other upstream 281087 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 798654 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 1224465 15791559 ~ 15795122 (+)
G371182 NA other upstream 1890770 15124290 ~ 15128817 (+)
G373726 NA other downstream 632574 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 995904 18067350 ~ 18177035 (+)
G376320 NA other downstream 2911722 19983261 ~ 19983848 (+)
G377022 NA other downstream 3519941 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 3672045 20508074 ~ 20759255 (+)
G373073 NA non-coding upstream 301 17045014 ~ 17045237 (+)
G373068 NA non-coding upstream 8174 17035358 ~ 17037364 (+)
G373090 NA non-coding downstream 23180 17069181 ~ 17069425 (+)

Expression


Co-expression Network