RNA id: TU423147


Basic Information

Item Value
RNA id TU423147
length 1328
RNA type TUCP
GC content 0.50
exon number 1
gene id G372281
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16218328 ~ 16220933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacacacaaacacagttccaTCACCACTTCTCTTCCATTCGCTGTTCCTTTTCTATCACTTCCCTGTTCCTTTCTTCATAACTCTTCATAGTCTGATGCCTGAGAGAGGGCAGCTGTTCTCAACGTCACAGCACTTCACATCCAATGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACATTCCTACAGTATGTCACTTTGACTTCTGTAACGCTTGGTGTTGAACACCCTGTAAATGAGTTGAGAGCATGTAATGAAATACATCTAAAGCATCTTGACTACTAACTTGTCACTGACACTATAGGCTACATTAACAGTGAAAGACTTCTGCTACATGATTATTCTCAATTCTCTACTTATTTACTAATAACAAATACAATCATTATTCTCTATAAAAAAtactaggatctgtccatatggCAATAATTTATAGAATAATAGATCCTTTGATGTTCCTTTTCTGTGAATGTGTTGAAATATGTTCAGGTCATGCGCAATTCTGTCCAGCTGTGTGTTGTGAAAGGACAGAAAAACTAGTCTTGAAATCCAGCTCACTCAACATTTTAGGAATATGGACCGAATGAGGCCTACAAAACACTATTGCATTTCAGAGTGCGTTAGAAGCTCTGATAACAGTCTGTGTCAGTCATTTTATTGTGTGGTGTCTGTTGCAGCATCAGTGTCAGTCAGCTAGGAGCCCCCAGCCCCAGAGGCCTCAAATGAAGTCACGGCCTGTAGTAGCTCTCCCAGCCCGTCTTCCTAGCTCCGTTGTGGGACACTGGAGTCCTCAGGGCTGCTGTCCAGCAACTCATCCTCTGAGAAGCTGATGTGCAGACAGGTGTCATTgatgggggaggagaaggggagcgTGTGCTCGTAGCTGTCCGCGTGTGTGCCTGGGGTGGTGGTGACGCATGACAGGGGCGCAGTTTCCCCCTTCATGTCTTCTAGGGGGCTGCCACAGCCGCTAGAGGCAGTCAGGAATGCCCCCCTGTCCCCAAACGGGTCCTCTTCGTCGTGGAGGGGCGAGAGATGCGATTTAGTCTCGGAGCGGACGCCGGAATCCTCGCTAGCTGAGCCGCACGAGCCGCTCTCGCCGCCTCCGTTGCTGAGCTGGTGGAAGTCTCCTGAGAGTCCGGAAGAGAGGGAGCAGGGCGTGATGTCCGGGAAGGACAGGCTCTCGCTCCGGCTCGGAACGCCACCATTCCCGTCTACTTGTGTGGTCAGGGGCATGGTCAGCGGGTTGAACTCCAACCCCGGAGAGACAGTTCGGCTGGCTCGCTTACGGTTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423144 lncRNA upstream 2735 16216672 ~ 16216871 (+) True G372279
TU423135 lncRNA upstream 8193 16211123 ~ 16211413 (+) True G372270
TU423119 lncRNA upstream 18460 16200783 ~ 16201146 (+) True G372255
TU422582 lncRNA upstream 53802 16161694 ~ 16165804 (+) True G371818
TU422586 lncRNA upstream 54612 16163837 ~ 16164994 (+) True G371819
TU423155 lncRNA downstream 26350 16247283 ~ 16247571 (+) True G372288
TU423174 lncRNA downstream 62224 16283157 ~ 16302922 (+) True G372304
TU423199 lncRNA downstream 108475 16329408 ~ 16329658 (+) True G372329
TU423201 lncRNA downstream 110158 16331091 ~ 16331347 (+) True G372331
TU423203 lncRNA downstream 114252 16335185 ~ 16335553 (+) True G372333
XM_021601910.2 mRNA upstream 361246 15852569 ~ 15858360 (+) True ptges
XM_036976903.1 mRNA upstream 380147 15816800 ~ 15839459 (+) False usp20
XM_036976905.1 mRNA upstream 380147 15816800 ~ 15839459 (+) False usp20
XM_036976906.1 mRNA upstream 380147 15816800 ~ 15839459 (+) False usp20
XM_036976907.1 mRNA upstream 380147 15816800 ~ 15839459 (+) False usp20
XM_021601919.2 mRNA downstream 213330 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 213342 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 233662 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 233662 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 233866 16454799 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 424484 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1090789 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1166050 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1414135 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1851445 14367672 ~ 14368161 (+) True G370414
TU423245 other downstream 514709 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 649501 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 649501 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1483180 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1846510 18067443 ~ 18083365 (+) True arhgef28a

Expression Profile