G371818


Basic Information

Item Value
gene id G371818
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16161694 ~ 16165804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU422582
GGAGGACACTCTTCCTACTAACAAATGTACATTCTCCTCCACCACTTATCGGTTTCTGTgtcaaggaggagagaggatgaaggaCCGACTTTGGGCCAAATGAAAAAAGGCCCTGATATTAGACATCTGATGATCCAAAAAGACAAGAGGCCTGTATATTGCAGAGATAATACTTAGGAAACTATACAGGCCTACAAACATTTAGAAGCAAGAGCAGATcataacattaggttgcatcaAATCAACATAACATTAGGTGGCATCAGAACaacataacattaggttgcaACAGATTAgcataacattaggttgcatcagAACAACATAACATTAGGGTGCATCAGATAGCATAACATTAAGTTGCATCAGATCaacataacattaggttgcatcatACAGCATAACATTCGGTTGCATCAGAACAACATAACATTAGGTTGTAGCAGATCATAACATTAGGCTGCATCAGATGAgcataacattaggttgcatcatACAGCATAACATTAGGTTGTAGCAGATCATAACATTAGGTTGTAGCAGATcataacattaggttgcatcagacaacataacattaggttgcatcagAACAACATACCATTATGTTGGATCAGATCAGGataacattaggttgcatcagATCAACATAACATTAGGTTGTAGCAGATCATAACATTAGGCTGCATCAGATGAgcataacattaggttgcatcatacagcataacattaggttgcatcattcagcataacattaggttgcatcagacaacataacattaggttgcatcagatcaacataacattaggttgcatcatacagcataacattaggttgcatcatacaacataacattaggttgcatcatacagcataacattaggttgcatcatacaacataacattaggttgcatcagatcaacataacattaggttgcatcagatcaacataacattaggttgcatcagATCAACATAACATTAGGTCGCATCAGATAgcataacattaggttgcatcatacaacataacattaggttgcatcagatcaacataacattaggttgcatcatacaacataacattaggttgcatcagatcaacataacattaggttgcatcagatcaacataacattaggttgcatcagatcaacataacattaggttgcatcatACAACATAACATTACGTTGTAGCAGATcataac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422582 True 1209 lncRNA 0.37 4 16161694 16165804

Neighbor

gene id symbol gene type direction distance location
ptges ptges coding upstream 303334 15852569 ~ 15858360 (+)
usp20 LOC106569850 coding upstream 322235 15816800 ~ 15839459 (+)
LOC118964570 NA coding upstream 329953 15829533 ~ 15831741 (+)
med22 med22 coding upstream 351192 15796177 ~ 15810502 (+)
LOC110523312 surf1 coding upstream 370666 15788795 ~ 15791028 (+)
LOC110523326 dusp26 coding downstream 268459 16434263 ~ 16437732 (+)
LOC110523327 LOC105015301 coding downstream 288791 16454595 ~ 16470342 (+)
pargl LOC106569224 coding downstream 350996 16516800 ~ 16557705 (+)
LOC110523336 NA coding downstream 525101 16690905 ~ 16694551 (+)
polm LOC106569276 coding downstream 546378 16712182 ~ 16726009 (+)
G371748 NA non-coding upstream 101271 16060013 ~ 16060423 (+)
G371743 NA non-coding upstream 106651 16054598 ~ 16055043 (+)
G371733 NA non-coding upstream 128828 16031679 ~ 16032866 (+)
G371734 NA non-coding upstream 129008 16032454 ~ 16032686 (+)
G371706 NA non-coding upstream 168829 15989886 ~ 15992865 (+)
G372255 NA non-coding downstream 34979 16200783 ~ 16201146 (+)
G372270 NA non-coding downstream 45319 16211123 ~ 16211413 (+)
G372279 NA non-coding downstream 50868 16216672 ~ 16216871 (+)
G372281 LOC106569177 non-coding downstream 52524 16218328 ~ 16220933 (+)
G372288 NA non-coding downstream 81479 16247283 ~ 16247571 (+)
G371615 LOC100194725 other upstream 366572 15791559 ~ 15795122 (+)
G371182 NA other upstream 1032877 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 1108138 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1356223 14798616 ~ 14805526 (+)
G370414 NA other upstream 1793533 14367672 ~ 14368161 (+)
G372373 NA other downstream 569838 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 704630 16870434 ~ 16882185 (+)
G373726 NA other downstream 1538309 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 1901639 18067350 ~ 18177035 (+)

Expression


Co-expression Network