RNA id: XM_021601910.2


Basic Information

Item Value
RNA id XM_021601910.2
length 3023
RNA type mRNA
GC content 0.44
exon number 3
gene id ptges
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15852569 ~ 15858360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcgagagagagaagcaccAGACCAGCCCCTCCAAAATGTGCGTCAGTGAAAGTGTTGAGTCCTGGTGCTCCATCCCGCTCCATACTTTCCAGTTAGGCTCCATGAGCACGAACAACTCTCCAACCGCAGACGTCGATAACACAGCCGTATTTCACCTGGGAATTGGAAGACCATACCAAACAATCATGTTGGAGAACGAGGCTTTTTCCTGTTTTGTTTTCTATAGTGTTCTCCTGGTCATCAAGATGTACATCATAGCAATCATCACTGGACAAGTCAGGCTTCGTAAAAAGGCTTTCGCTAACCCAGAGGATGCGCAGAGACACGGCGGCGTCCAGTACTACAGAGAGGATCCGGACGTAGAACGGTGCCGAAGAGCTCACCGTAACGACATGGAGAATATCTTCCCTTTCCTGTTCCTGGGGGCTGTGTACTCCCTGATTGGCCCGTCGCTTGCCGTGGCCCGCGCTCACTTCCTGGTCTTCTTCCTGTTCCGCATGCTCCATACAGTGGCCTACCTGTGTGTCCTGCGGGCACCCACACGCTCCCTGGCCTATGTCGTCGCCCAAGTGCCCTGCGTCTCCATGGCCGTGCAGGTCCTCGCGGCGGTGGCCTCCTCGTGGTAGTTGTGGTGTTCTGGATCTATCTGTGACCGCTTCAATCTGAGACCTATCTCAGTCTGTGAGATCAGCGGTAGAGGATACTGCAAGAGATGCTTTTCATACAAGAGAAATCCTCAAGACTATATCGCTATCAATGCTACCATAGCAGTTTGTGTCTCTCGGCTGTAAGACAGTGTGTACTCTGAAAGTGTGTACTCTGAAAGTGTGTACTCTGAAATGAAGTCAGTGTTGTGCTCTAGCAAGCACATCCTCCTGCAGTACTGTATGTTTGCTATGCAATGTTGAAGTCAATTGCCTCCCTCTTGATAGTCCAGGGGACTCAACTCTCTGAAGATAAAGGTTTTAATTAGTTAACATTGAACCTTTTAACCAGTtcattgtgttgtcatgttgtttttGTATACACAAGTTGTTGCTTGTTTCTGtcttttttattctctatttcttgttataaactgggtggtttgagctctgaatactgattggctgacagctgtgttatttttactgctctaattacgttggtaaccagtttctaatagaaataaggcacctcaggtgtTTATGGTATATTGCCAgtatatcacggctaagggctgtatccaggcactccgcgttgcgttgtgcgtaagaacagcccttagccgtggtatattggcccaataccacaccccctcgggccttattgcttaattatacttAACCCTGATTGGCTCCAGGGGTGCTGTACTacaatggctgaccctgtaaaacaatacatttcactgcacctattttATTCCACTGAGAGCTATTTTAGTACAGTCTGGGATATAATGACCTTTTATCTGAAACCAGCTTGATCCAGTCTTAGAGGTTGAACTGAAGAGCAGGCATGTGCCCTTCTAAGGAACTTTTCCAGTGTGGTGGTTCACTGTGTTCGTTTATCTAGCATTGGCCACCATGGCATCACATGATGGGGGATGATGACACAGAGACATCATGTCTACCACACCTGTCGATGGGATACTGATGAGGCCAAGAGTTTTTCCTGATCACAGGATTTGACTACATCCCATAGTTTTTCCTGGTCTGGTCCTGGACCTAGATAGGTGCTATGACTGCTGAATTGTCCATAATCATAACATATATTTTATCCTCCACCTCTGTGTTTCTTTAGCCTGGTTCTAGATCAAAATTGGCAAGGCAGGATAGGGGTTTCTTCAGTATTGTCCatgtagggtagcctagtggttagagcgttggactagtaaccggaaggttaccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaaataaataaccaaTGGGTGGTTTGTTGATGAATGGTCCTCTACTGTGTTGTGTCTTCTACACTGCAGCCGCTTGAGGCTTGCTAGAGCAGAAGTTGGCATTGTGAAACCTATGTGTGTCAACTGGGCGTCATTACTGGACAGTTATTGCACATTTCCAAGTTACTGCAACACAATTCCAAGTTACTACAACACATTTCCAAGTTACTGCAACACAATTCCAAGTTACTACAACACATTTCCAAGTTACTGCAACACAATTCCAAGTTACTACAACACATTTCCAAGTTACTGCAACACAGTTCCAAAGTCTTTGTGTTTGACctaatacaatgctatttctctgtaaataaATTAAccacagactttcagcatgcttctAGAGAAGGTcgctcaacatgtactgcactgacacaactGACTgatgagctgttcttgtctattaatgttctgtattatgtcattctgtattatgtttcatgttttgtgtggaccccaggaagagtagctgctgtttttgcaacagctaatggggatccataataaaataccaaatacccactgggcacagacgtcaattcaatgtctattccacattggttcaatgtaatttcataaaaataatatGGAAACAATGTTAATTCAAGCAGTGTATGCCTAATGGGACGCTACTGCCACACCTTTCCAAGTTACTGTTTCACTGTTCCAAGTTACTGTTTCACAGTTCCAAGTTACTGTTTCACAGTTCCAAGTTACTGTTTCACAGTTCCAAGTTACTGCTTCACAGTTCCAAGTTACTGTTTCACAGTTGCAAGTTACTGCTTCACAGTTCAAAGTTAATGCTTCACAGTTCCAAGTTACTGCATTTTTCCTAGTTACAGTTCCAAGTTACTGTATTACTTTATGTTTTACTCTGTTATTGAATGTGCATTGAAAAGAATGGGCATCTTGTAGAATGTACAAATGGATGTGtatggagtgcaatgagagagtaAAGTGAGTCCTTTAA

Function

GO: NA

KEGG:

id description
K15729 PTGES; microsomal prostaglandin-E synthase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422377 lncRNA upstream 848 15851370 ~ 15851721 (+) True G371639
TU422370 lncRNA upstream 36820 15815205 ~ 15815749 (+) True G371632
TU422350 lncRNA upstream 58945 15791559 ~ 15793624 (+) True G371615
TU422343 lncRNA upstream 137974 15714329 ~ 15714595 (+) True G371612
TU422341 lncRNA upstream 139368 15712970 ~ 15713201 (+) True G371610
TU422392 lncRNA downstream 11413 15869773 ~ 15870026 (+) True G371653
TU422395 lncRNA downstream 28878 15887238 ~ 15916078 (+) True G371656
TU422407 lncRNA downstream 36015 15894375 ~ 15899296 (+) False G371661
TU422408 lncRNA downstream 36015 15894375 ~ 15899296 (+) True G371661
TU422424 lncRNA downstream 68406 15926766 ~ 15939264 (+) True G371672
XM_036976903.1 mRNA upstream 13110 15816800 ~ 15839459 (+) False usp20
XM_036976905.1 mRNA upstream 13110 15816800 ~ 15839459 (+) False usp20
XM_036976906.1 mRNA upstream 13110 15816800 ~ 15839459 (+) False usp20
XM_036976907.1 mRNA upstream 13110 15816800 ~ 15839459 (+) False usp20
XM_036976904.1 mRNA upstream 13110 15816853 ~ 15839459 (+) True usp20
XM_021601919.2 mRNA downstream 575903 16434263 ~ 16437732 (+) False LOC110523326
XM_021601920.2 mRNA downstream 575915 16434275 ~ 16437732 (+) True LOC110523326
XM_021601922.2 mRNA downstream 596235 16454595 ~ 16470342 (+) False LOC110523327
XM_021601924.2 mRNA downstream 596235 16454595 ~ 16470342 (+) False LOC110523327
XM_021601925.2 mRNA downstream 596439 16454799 ~ 16470342 (+) False LOC110523327
TU422347 other upstream 57447 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 723752 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 799013 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1047098 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1484408 14367672 ~ 14368161 (+) True G370414
TU423147 other downstream 361246 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 877282 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1012074 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1012074 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1845753 17704113 ~ 17707757 (+) True G373726

Expression Profile