RNA id: XM_021602337.2


Basic Information

Item Value
RNA id XM_021602337.2
length 1328
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110523547
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28464099 ~ 28467134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTTAAACTGTTGTGATGTATATGGTATACACCtgccaggtagctagctagcttagcatATTGAAGAATAAAACACTGAACCTAGAGATGAAGAAATGTACAGTAGTAAATCTGGACAAGTTTATTGATGATTTCACTCATCTGGAACAGGTAACTTTAACATAAAGTAGGAGGACAGCTAGTTCTTCAGGTAGGTAAGTTAACGTTAGCCcgctagctagccagtaactaatctagctagctagctaaataacttAAAATAGCCTATGAGCAGGCTATGCTGAATTTGCCTTAAATTAATCCTGTCATGAAAGTGGCAGTAACAACAGTTCCACCACTGCCTGAGGATTTCAATAAAATTACAGAGCTCAAGGGTAAAAACAACATATTGGAGATCAAGTTGGATGAGACCAACAGAGTTCTGAAAATTTCTCAGACCAAAGAGAAGTGCTTGATTGAGGAGCGAGATGGGATGTTGGGGACAGTGAAGGGACTCCAGCAGACTCTACTGCAGCAGTGTGACCTCAGAGTGGAGAATGAAAAGTTGAAAAGCACTGTGTCAGACCTAAAAAGGCAGAGTGATATGACAGTAGAGgagcGGGAAGCTGAGATTCAGAGGCTGGTGGCAGAGATGAGAGCTGTGGGAGAGAGATATCAGAAGGAGTTGGAATCTCTGAGAGACCAGTgcaggagaggggtggaggacactcacagagaaacacagagcaaACTTGAGGCGAAAGATGCAGAACTGAAAGAGGCCCTGGAGAGGAAGGAGTCAGATATGgcagagatgagaaggagaatgagggaccaggagagagagaggcaaagtgAAATATTAAAGTTACAAATGGAGTTTGGTGCTAAGCTTGCCAGGGTGCAGAGTACCACACAGAGGATCCAGCAGCAGCCCCAGGGCTCAGGTCTTTTACCTCAGAACATCTTCAAACGGAAGTTCCAGTTCCTTcaggaggagaagaacagagaggtcGAGGCCCTGCGCCAGAGAATCAAGGAATTGGAGAAGCAGCACGCCAGCGGATTCAGTGACTCCCGTCTAAAGAGAAAGAAGATTTAGCATATTTAAAATATGCAGGAGTGAAATTCATCTACAGTTGTGCCTTTGTATTCTTTTTGGTATAGTGTTCCTGGTGTTTGCTCTCAAACAGTAGTTGGGTCATTCTACGAAATGAGTGCTTTTTCATTGTTTAAATacaaattgtgcaccaatattgaattttaaaagcctgttatgtTAATTGatgtgccctttaatatagaccacatggagaattcaataaatcagattttATTTATATGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438301 lncRNA upstream 31759 28430681 ~ 28432375 (+) True G385885
TU438302 lncRNA upstream 39240 28424520 ~ 28424894 (+) True G385886
TU438298 lncRNA upstream 39617 28424303 ~ 28424517 (+) True G385884
TU438281 lncRNA upstream 67388 28396537 ~ 28396746 (+) True G385868
TU438277 lncRNA upstream 75201 28388727 ~ 28388933 (+) True G385864
TU438307 lncRNA downstream 4935 28472069 ~ 28472287 (+) True G385891
TU438309 lncRNA downstream 8260 28475394 ~ 28475595 (+) True LOC110522905
TU438349 lncRNA downstream 69205 28536339 ~ 28539057 (+) True G385933
TU438362 lncRNA downstream 93113 28560247 ~ 28560612 (+) True G385946
TU438392 lncRNA downstream 191438 28658572 ~ 28658860 (+) True G385973
XM_021601256.2 mRNA upstream 185 28443277 ~ 28463949 (+) True ghr1
NM_001124535.1 mRNA upstream 189 28439078 ~ 28463945 (+) False ghr1
XM_036977205.1 mRNA upstream 40187 28418222 ~ 28423947 (+) False rgs7bpb
XM_021602336.2 mRNA upstream 40187 28418224 ~ 28423947 (+) True rgs7bpb
XM_021602334.2 mRNA upstream 47726 28406724 ~ 28416408 (+) True rnf180
LOC110522905 mRNA downstream 6413 28473547 ~ 28475538 (+) False LOC110522905
XM_021602340.2 mRNA downstream 14298 28481432 ~ 28483385 (+) True LOC110523549
XM_021602344.2 mRNA downstream 253143 28720277 ~ 28733042 (+) False pip5k1ba
XM_021602345.2 mRNA downstream 253143 28720277 ~ 28733042 (+) True pip5k1ba
XM_021602350.2 mRNA downstream 270327 28737461 ~ 28780731 (+) False LOC110523554
TU438217 other upstream 46579 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 559403 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 757056 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 780741 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 1800521 26661838 ~ 26663613 (+) True G383794
TU438959 other downstream 459143 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 1274666 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1429852 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1819817 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 3493221 31960355 ~ 31960745 (+) True G390184

Expression Profile