RNA id: XM_021602663.2


Basic Information

Item Value
RNA id XM_021602663.2
length 3038
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110523723
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36931737 ~ 36957641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAAATACACAGAGAGCTTCTGAGAGGGAAGACGTAATGGTGTGATTCCTTGTGCCCTTGCAATGGTCATCATTCTAATATTACTCGACAAATTCCAGAACCGGGAGTCGGAATGAAGGTATGGGTTGCAAACTCTGATTATACGGATGCATGTATAAGGCAGGGGCATCGTCCATGTGGGCATCATGCTGCGGGCTGCTGAACGAGGTGATGGGCACCGGGACGGTGCGCGGGCAGCAGCCAGGGTTCGGGGCCGGGGCGGGACCCTTCCGCTTTGCCCCCAGCGCCGGGTACTCCACCTACCCCCCCACCAGCGCAGGGAGTGTAGGTCAGCTCTGCAAGGCCTGTGGGCTGGCCTTCTCTGTCTTCAGGCGCAAGcaCATTTGCTCGGACTGTAAGAAGAGTTTCTGTGCCCTGTGCTCGGTGCTGCAGGAGAACCTCCGCTGCTGTACCACCTGTCACCTCCTGCGCGGCACGGCCTTCCAGAGACCACAGCTCATGGCGCTGCGCGTTAAAGACCTGCGCCAGTACCTGCTGCTGCGCAACATCCCCACAGACACCTGCAGGGAGAAGGCGGACCTGGTGGACCTGGTGCTCTGCCACCTGGAAGCAGGGGAAAACACCTCCACACAAGGagctgtagaggaggaggaggaggaggaggacacagacagcctgcactccctcccccactccctccaCGCCTCGCCCCCCTCAGCCACACGACGCTCCGCCTCGGAGCAGTCGGTGCTCTCTGCCTCCCAGGGAGACGCTCCTCTCAGCCGGAGTGACAGCTCAGGGACCGCTCAGAGCCAGCCGCATGGGGAAGCTCCAACCATCCCCCTCCTGCACCTGGAACCTGCCAGGGAACCTATCATAGAGGTCAGTCCGGTGACGCAGAGGAGGATGCGGGCCTCTTTGTCTGACCTGGATAATGAGGGGGACATTGAGAGCCTGTCTGTTCGGCAGCTCAAAGAGATTCTGGCCCGTAACTTTGTCAACTACTCTGGCTGCTGTGAGAAGTGGGAGCTGATCGAGCGGGTACATCGGCTCTACAGGGAGAACGAGCAGAACAGGAAGTCCATGGAAAATGTCAGTAACATCAACAGCATGACCGCAGTGGTGGCATATCCTCCACCTATATGCAATGGTGCAGTGGGAGATAGTATGAAGGCTCAGCTGGCCTCTGATGATCACCTGTGTCGCATCTGCATGGACGCTGTGATCGACTGTGTGCTGCTGGAGTGCGGCCACATGGTCACCTGTACCAAATGTGGGATGAGAATGAGCGAGTGCCCCATCTGCAGGCAGTACGTGGTGCGGGCCGTGCACGTCTTCAAGTCTTAACTCTGCCGTGGGCGAGCATTTCAGCCGAGGACATTGAACCTGTGGCAGAGTGTGCACATGCTCGAAAACCTGAATCTGTAGTGAGGGAGTGTGAATGGGCTGTGCACGTTTCCAAGGATGCAACAGACGTGCACATCCTCCAGTTGAAATGACATGCAGAGCAGACAGCTTCACACAGCCTAACTTCTATTACTAGAACTACAAGTCCCACTCCCCCCCAGTGATGGTCTGGACCCCACTAGCTGCACTGACTGACCTTCTACAGGTCTTTAGTGTAACACACACTGAACCGTTCCAAAAATAACTACAATATCTTATTTTACAGTGCTTCAATTCAGTTtgtagcatttaaaaaaaaaaacgtataatTAACCATGGAGCGGAGTTGGTCCCATGGATGCTTGAATTGGATGTGATCGTTCATGGTGCGTGGCTGAGGTGATCAAGGTGGAAATGATGACGATATTCCAGGGTTAGAGTCGATATGGTTTACACACTCCTGTCACACCAGGCTATACTGTACGTATCTCCTTCACTGTTCTTTAGTATGTGCAATATTTAAAAAAAGAGACTTCTATGTGTGAGTGAGGGACTGTCTGtctataaaccagtctgtatgtTTCTGTGCTGTTTCGTTCTACACACACATCGTAGGGTGTTTTAGGTGCCAAACTTCACACCACaactacagtacattactgatGTCTGATTGCGGTTTCTATGCCAAGTGCCACTCCTCACTTCAGGCCATGCATTGTAGATTGGAGCAGCATCCAACCCAAACTCAAATGAATCAAATGTGTTCAAGCTCCGTGATTGGTTAGATTGTAGGGAAACACTTGAGCCACATGCTATGGGTTAGTAAGGGGCTTCAGTTCAGAGTTGTTCCACCCATCTCTTCTTGCATGTGTTTAGTCAGTCACAAGTGATATCACATTATGATCAATATGTACTATGTTGATGATCTTGTTTGGCTTGGATAAGGCTCCCGTCTACTGCACGCTGTCTACTGTGGTAACATGCCATACACTGTGGCTGGGTCATCCCGTGCTTTATATTCCTGTGCTCTGTGTCGCTTTTATTAAAGTCAGGCATGACTGGCAATGTGTCTCTGCCATTTAATTAAGCAATATCATGCCATTTATTTTTCCATAGGTGTTTTGTCCGCTTGTGTTGTCCATTGGCCGTGCTCAACTCGAGAAGTAGGTAATCGGTGCCTATACTTAAACATATCTtgtatcatgttgtgggtgtgtctTGTGATATCTCTAATATTTTTTTAAGAGAATAAAAAGGAAGCATAACTTAAGTCTATTCTACATTAATCAGTTGATAAAATACAGCTTCTGTTCTTTCAGATTTTTTGAATGACTTTAAAAGAGTAGCTACTGATGCCTGTGGTACGTTATAGCAGAAAAGCTTATTGCTGTAAAATGTATTGCATAGGATATCTAATATTGTTGTTTACTGATATGTAATCTATAGACAAATCTATTTTTCCATTTGCTTTGGAAGTCTTATATAATTTATTAGCATTAATTGATATTTTTGAGAGGTTGAATTGCAATTTTTTTCAGAATGTAAATGCACTTAATTTGATCAGATGAATATGATGTTCTGCCAATCAAAAACAGGGCACTTACTGATCATGTGACAGCTCACAATTAAAGTTCTCTCCTTTTCCTTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU449307 lncRNA upstream 60719 36870818 ~ 36871028 (+) True G395972
TU449211 lncRNA upstream 183223 36743572 ~ 36748524 (+) True G395888
TU449047 lncRNA upstream 235300 36695208 ~ 36696447 (+) False G395748
TU449048 lncRNA upstream 235300 36695349 ~ 36696447 (+) True G395748
TU448988 lncRNA upstream 280075 36649959 ~ 36651672 (+) True LOC110522857
TU449400 lncRNA downstream 48012 37005653 ~ 37036550 (+) True G396058
TU449411 lncRNA downstream 82085 37039726 ~ 37047176 (+) True LOC100653458
TU449415 lncRNA downstream 90720 37048361 ~ 37048706 (+) True G396069
TU449423 lncRNA downstream 99007 37056648 ~ 37057052 (+) True G396077
TU449422 lncRNA downstream 100167 37057808 ~ 37059312 (+) True G396076
XM_021602661.2 mRNA upstream 48522 36828476 ~ 36883225 (+) True lrrc75bb
XM_021602658.2 mRNA upstream 125995 36797365 ~ 36805752 (+) True ggt5b
XM_036977398.1 mRNA upstream 126559 36797363 ~ 36805188 (+) False ggt5b
XR_002473377.2 mRNA upstream 279997 36649948 ~ 36651750 (+) False LOC110522857
XM_021602653.2 mRNA upstream 286549 36639656 ~ 36645198 (+) True LOC110523714
XM_021602671.2 mRNA downstream 70590 37028231 ~ 37032623 (+) True LOC110523726
XM_021602667.2 mRNA downstream 82020 37039661 ~ 37048058 (+) False LOC100653458
XM_021602674.2 mRNA downstream 103544 37061185 ~ 37084550 (+) False LOC110523727
XM_021602673.2 mRNA downstream 103684 37061325 ~ 37084550 (+) False LOC110523727
XM_021602675.2 mRNA downstream 103684 37061325 ~ 37084550 (+) False LOC110523727
TU448219 other upstream 630457 36280300 ~ 36301290 (+) True G395034
TU448184 other upstream 725131 36202901 ~ 36206616 (+) True G395005
TU448071 other upstream 896980 36033260 ~ 36034767 (+) True you2
TU448080 other upstream 926918 35966937 ~ 36004829 (+) True G394910
TU448046 other upstream 1025966 35905112 ~ 35905781 (+) True G394882
TU449364 other downstream 7443 36965084 ~ 36965652 (+) True G396022
TU450033 other downstream 451560 37409201 ~ 37410899 (+) True m17
TU450409 other downstream 961053 37918694 ~ 37921236 (+) True srsf9
TU452179 other downstream 2356693 39314334 ~ 39317715 (+) True LOC110523777
TU452856 other downstream 2804475 39762116 ~ 39765843 (+) True G399169

Expression Profile