RNA id: XM_021604121.2


Basic Information

Item Value
RNA id XM_021604121.2
length 7760
RNA type mRNA
GC content 0.46
exon number 6
gene id nlgn1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70065855 ~ 70348330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCTCCAACAGGGATGAGAAGAGACCTCGGCATTTTATCAAGCAGGTGCACCCTGAATCGTGAGGagcagataaaaaaaatatttcagttcTTTAGTTTTCATGTTGTTAAGACAAGGAGGGTTGCGCAAGACCCAGAGCAAATGGTCGTCTGATGAAGGAAAACATTTTGGATTAAAAACACTTATTCCGGCTGAGGGGGACCCTTTAGTTTGTCTTTATTCTGCGAAATTGGACCGAATTATGACGAAGTATGAAAAAGCAAGTTTTTAACCTTTGAAGTGAAAAGTCCTATTTTTTCTGGCAAGGTTTGTGTCCCTGATTTTAAAGAGCAATGCACTCTGAAATAACGGAACATGGCACTAAGGAAAATTGTCTGAGGTGACGACGAGTGGTGGAGATCAAGCCTTATGGATATAGACCCACGCCTCGACTGGGGTTGATTTATCTGTGGAAGACCTGCTGCAAATGGCTGCCCTGCCTGCGTCGCCAGGATGGAAAACAGGACTGTCAATAGGATGCGGTCTGACGAATAGCAGCAAGTGAAGATGTTGCCTCCGCCAGTGTGAAATCAGTGGGGAGTACTTGCCATGCAAAGAGCCTTTGAAAGTTTTGACAGCCGCACGTTTGGGAGGCCTCATACTTTTCCTTTGATTGTACCCTTTTCTGTGGGCGGACCTAAAGTGGATTGTTGCTGCTAGCGTTGCGGTGTGGTGAGCcctagttggtgtgtgtgtgtatctactgGTGTGgcagagggagcatgcccctGCAGAGGCCTGGCCGTCTGAGGCTGCACCCTGCCTGGAGGGTCATGCAGCCCCGGCTGGGCGTAGGCCTGGGTCTGGGCCTGGACCTCACCTTCCTGCTATGGATACTGAGCCTAGCACAGCAGGCCCCGGTCACGGCCTCTCAGAAACTGGACGAGACAGACCCTGTGGTCACCACCGTCTACGGCAAACTGAGGGGCGTCAAGAAGGAGCTCAACAACGAGATCCTGGGACCCGTCATTCAGTTCCAGGGGGTACCTTATGCCGCACCCCCCACGGGCGAGAGGCGCTTCCAGCCCCCGGAGCCGCCCATCTCGTGGCCGGAGGTCCGTAACGCCACGCAGTTCGGCCCGGTCTGCCCTCAGACCATCGTGGAGGGGCGTCTGCCAGACGTCATGCTGCCTGTGTGGTTCACTAACAACCTGGAGATAGTGTCTTCTTACGTACAGGACCAGAGCGAGGACTGCCTTTTCTTAAACATATATGTTCCCACTGAGGATGACATCCGTGAAAGCGGTAGCCCCAAGCCAGTGATGGTATTTATCCATGGGGGATCCTACATGGAGGGCACTGGGAATATGTTTGACGGCAGCATCTTGGCAAGTTACGGCAATGTTATCGTCATCACAGTGAACTACCGGCTTGGAGTATTAGGTTTCTTAAGCACTGGGGACCAAGCTTCCAAGGGAAACTACGGACTCCTTGATCTGATCCAAGCTCTGCGCTGGACTAGCGAGAATATTGCTTTCTTTGGTGGTGACCCTTTACGAATAACTGTTTTTGGATCAGGGGCTGGCGCCTCCTGTGTTAACCTCCTGACCCTGTCCCATTATTCTGAAGGTAACCGTTGGAGCAATTCAACCAAAGGACTTTTCCAGAGAGCTATAGCACAGAGTGGAACTGCGTTGTCCAGCTGGGCCGTCAGCTTCCAGCCTGCTAAGTATGCTCGCATGTTGGCCAAGAAAGTGGGCTGCAACCTGAAAGACACGGTGGACCTGGTGGAGTGTCTACAAAAGAAGCACTACAAGGAGCTGGTGGATCAGGATATCCAGCCTGCACGGTACCACATCGCCTTCGGGCCTGTTATTGACGGTGACGTCATCCCAGACGACCCTCAGATCCTCATGGAGCAGGGCGAGTTCCTCAACTATGACATCATGCTGGGGGTCAACCAGGGCGAGGGCCTGAAGTTTGTGGAGCTTATCGTAGACAACGAGAACGGCGTCCAGGCCAATGATTTTGACTACGCCGTGTCCAGCTTCGTGGACGACCTGTACGGTTACCCGGAGGGAAAGGACATTCTGCGGGAGACCATAAAATTCATGTACACGGACTGGGCTGATAGACATAACCCAGAGACCAGAAGGAAGACCCTACTAGCCCTGTTCACGGATCACCAATGGGTGGCTCCGGCTGTGGCCACAGCAGACCTCCACTCCAGCTTTGGGTCGCCAACGTACTTCTATGCCTTCTACCACCACTGCCAAACAGACCAGGTGCCCCCCTGGGCAGACGCTTCCCACGGCGACGAGATCCCCTATGTGTTTGGCCTGCCCATGATTGGCCCCACAGAGCTGTTCCCCTGTAACTTCTCCAAGAACGACATCATGCTCAGTGCTGTGGTGATGACCTACTGGACTAATTTTGCCAAAACTGGTGACCCAAACCAGCCAGTCCCCCAGGATACCAAGTTCATCCACACCAAGCCTAACCGCTTCGAAGAGGTGGCATGGACGCGCTACAACCAGAAGGACCAGCTGTACCTCCACATCGGCCTGAAGCCCCGAGTCAAGGAGCACTACCGAGCCAACAAGGTTAACCTGTGGCTGGAGCTGGTGCCCCACCTCCACAGCCTGAACGAGGTCACCCAGatcatctccaccaccaccaaggTCCCCCCACCAGAGGTCACCCCGAGGACACCAAAGAAGATCCCTGTCAACACCAAGAGGCCTAACCCCACTCCCTTCCCCACCGAGACCCAGGACAGTCAGAACCAGCCCTTTCTGGTGGACCAGAGGGACTACTCCACAGAGCTGAGCGTCACCATTGCCGTGGGCGCCTCGCTGCTCTTCCTCAACATCCTGGCCTTTGCGGCGCTCTACTACAAGAAGGACAAGCGGCGGCACGACGTTCACCGGCGCTGCAGCCCCCAGCGCAACACGACCAACGACCTGGCGCACACGCAGGAGGAGGAGATCATGTCCCTGCAGATGAAGCACACGGATCTGGACCACGAGTGTGACGCCATGCACCCACACAAGGTGGTTCTGAGAACTGCCTGCCCGCCAGACTACACGCTAGCCATGCGACGCTCTCCTGACGACATCCCCCTCATGACCCCAAACACAATCACCATGATCCCCAACACCATGCAGGGCCGCCAGTCCTTGCACAACTTCAACACCTTCCCCAGTAGTGGACAGAACAACACCCTGCCTCACCCACACTCACACTCCACCACCAGGGTATAGCCGGACGGACGGACGCTGACACACACAGCACACGCCAGAGCTCACACCCAGCCTGAATCAAACGGATGTGGAATAACTTCTACTCCTGTGAATATATGAAAGGAATATAGGAATGTTGCTGGGACTGGAGAAAAATGTCATTTTATATAAAAGAAGATATGATTAAAAGTACAAAAATATTTCAAATGAAAAAATGAATAAAGAGAAGGATCATTTTTATTTCTGGTATTGCAACAAAACAAGGTCAACTTTTCCAGCTATAGATATCGCCTTCGGAATTTTATATACGATTGCTTGATCCTGTTATCATGGAAAAGAGAGAAACCTCAGTGGAGCCTCAGAGGAGTAGCAGGGCCGCTTTGTAAATGAAAGAAAACATATTGTTTTCCTGAGGCATCAAACTGTAGATTACTCTTTCTGGAGCCAAGATGAGATGCCGCTTAACCAATTTAGGCATGTGTTACTCTACAAGTAGAGGCAGTGTAAGATATGACAAAAACTatctagagagagggggaaaactcTTAAAGAATATGCACAATGtagacattttttaaatgtcttggaTTCTTTTCATCAATTTATTTTTGGGGAACAGTTTTATTGTATAGAACCTATTTACATATCTAGATATGTACACAAAGCACCAATGCTGTTTAAGTCCTTCTTGGGCGTCAATACCGCAAATCTGCCAGCAGAACAAAAAAAGGGGGATCCACTGGCTTTCTGGCAGATACAGCTTCATCACACAAGTGCTGTCTATACCGAGAGCTGGAGGacaaaggatactggatattttTAGCACGACGCGCATGACAATTTATCTGCTTGATGGCTGTTCTGCTGATTAAGTCATAATTAAGAATACTTTTCATCCCCATTGGATTGGTTTGAAGGAACACTACTGATTAGCTTACAAATCCATAGGACTTTGGGAATGGTCACATGGGTGAAGGGAATGGGTCATAATTGGGGACAGCAGGGGAGGGTTAGCTTAtggtaactacagtacatacacaatAGCTTGAATGAACATGGGTATAAGGACTAGTTTTGTACAATTTGTGTTGGTACAACTTTTTGATAGTGGTGAATCACTCGCTGTTTGGGATCCCAATGGAGGGACCTTTCATTGTACTCTTTTAGTTTGGATCAATGTTCTTTGCTATTATACATATTGGGTTTCTTATCACCACCCTTGACTAGTTCAAGACCACTTTAATGTAGAAAAGTAATTACCTGCACTGTtgatttgttttggggggggggggggggtgcgtatGAATGATTCCTGAGCACAAAGCGTGCCCAGGGCTATGAAGAAGGGAATGTGAAGACTAGGAAATAGTAGAACCTCTTGGCTGCATAGATTTTCTTTCCTCCTATTATCCTTTCATAGAGTATGTTCCGTAGCGCTGTTTAAAGATGAATGCGTATAAATGTGTAATTGAAGCGAGGAGGCCCTCCGCTGACATGGTTGATTAGGGGTTCCTCTCATCCTGTCGTCCCTGCAactcaacagagagagagaaagagagcgagagattcaGGAACTCCCATGGTACACCTCTCCCAGGCAGGGAACAGTGATCAGTCAGATTCTTGCTCACTGCAGTAGAACCGGTTTGCTATCACCCTCGTCTCTCACAGAGTAAATGCCATTTgcctctgtttttttattttctactGAAGATGCTGTACTGTATCATATCAGAGTTTCTGGACTTTTAGTTCTCCTTTTTCTTTAGCATGGTTTACACATGCCTTGGTGTCACATTGTACATGCTTGTCGGCATGTTACCATCACTGTCCCGCTAGCCCCAGTGAGTGTTCCTGCCATCGCAGTGCTAGAGTGCAACTTCCCTCTGCCAGCTAGCGCAGGCAAGTGGAGTAATAATGTGTCATACAAATACAAACCAGAGTGAATAGCTTAAAGGAGGAAGGCGCTGAGGGGAAAATAGTTCTCTCTAAACAGACAAAAGGCCTACTGTACTCAAGCAGAGAGTGGAGACGACAAATACATTAGTAAGAGAAGACTCATAAGTAAGACATAAAATAGTAAGAAACATTATAACACTCCCATTTTCCTGTGTAATAAAAGCCTGGACATTCGCTCCACCTCCTTTACTTACTGCCGCTCTACAGTCATTCAAAGTAAAAACATACACTTCCAAACAATGAGCTGTAGACAAGGTGTAGCTTTTTTGGGGAGGTGAACATAAATTATAACAAAACCTTCACGTGTCCCAAAACTAACACCCAAGCAGTTTCACCAGTCTGTATTACAGTGCTGTGACCTCTTAACAAGGCTGGAGAAATGACAGTTAAACATGTAATTGCGAATTAAACATGTAATTGCACTACAGATAAATGATCAAGTAACATTGGAGAGTTAGCAGGTGAGGAGAATGCTAAAGAAGCACTTACTTTAGCGCGCATAAGCCAGCCTGGATTGTAAACAGAGTTAGAAATGAGCCAACCTgtactactctcctctcccatcctccttccctcccatAACAGCTCACTCTGTGCACCCCCCATTTTAAATTAGGTATGAATATGGATAGTTGCTGCTCACTGTACTCTCTCTCCATCATGCTCCCTCAGAGTGGTGTTAAAATTGTATGAGCCAGTGGTGAAGGAGAGCTTTTCCAAATTTTCATGCAGGACTTCTAGAAGGTaagagaaagaaggggggggggggggggtgggggggagtacCTGAAGCTATAATGTGACCATGTGGCTCATGCCTAACCTGTGTTACCCAGTCCTGGACAGAGGAGGGTCAAGCATTGTGAATGAATGTAAAGCAACGAGTGCCATTTTATATAAAACGCTTCTCAACATCTTTGAGATCTATGAAGATCTATCAAAGGGTGATCGCTCTTTCAAAATGTCTGTGAAAAGGGCGCTATGTGAGTGGGTATGGCAGTTGTATTGTAGATTATTTGTCACTTGTCTTTCTTTCTGGTTAAATAGTAATTACTCTTCTGGAGCACAATAAATGATTTTAATAAGCTGAATTAGCATTGCTGCAACTCTTTTTTTCCCCCGTTATGTTTGTTCAATAGGCTGATTTGATTATATTGCAGAGTAGACACTCACAGTTAAAGAATGCTTGACTGAACTGAACTTCAAACAAGCCTGTAGTCACTCACTTGTCTGTTGGTCTGTCACACACTGTTGGGTTCCTTTGATGTATAGGACTTCGTGTGTCCTAGACCTAGACTGAAAACAAAATCTCAGACAGTGGATCTTTACATGGCTTAAGTaaccaaatgaatacaaccaacAATATGGAAAAACAAATGACTCTTCTGAAGGGTAATGTACACACCAAACCTACACTTACTGTTTTCACATTGGTTATACCACAGACATTCAGCTTAATGCGAGTCACAATTTGTTTTGTATACACTGGTGTATCATTTTTGACAAATAACAGAAGTCCCAGATACATTATCCCCTCAAACCATAATGTAATATAAAAAGTATCAGGGGAAGGTTTCTCAGTTGCTACCTGCTAGGAAAAAGTACAAAGGTTTAGACAGTGCCATTATTTTCTGGCATACTGTATTTCCATCGATCCTGTACACCTGTCACTCCTCCTTACTTGTTGTACATTTTATGAACTTCAAATTTGATTGTTGAACACTGAAAGAGGAGCAAATGTCATTGCTGGTAGAGGTGTCCTCCCTTACATTTTCTCAGTCAGCGTGTAAGGAAAAATAAAATGCAGCTAGTTAGGCTTCAGTATCAAAGTATTTAATTTtataaatactttagaaaaagGATATAACTTATTGTTTTTATCTGACATTGTCAACTCCTTTGCTTTGAATGAAGTAAAAAATACCTCTGTCTGGTATTTATTAAGAACCTGCAAATCATATACTACAGAATACCAATGTTAAACTAATTTAGACAAAGCAGCTACCAACCACACCCATGTTTGTTGCATTTGTAAATGACAAGTGGGTGGCATTTCTGTGAATTTTTCTGTAAATAATGCTTTATTATAGCTTACTAATACAAGTGATAATGGCATCCCATCATTTTAGCTGCTGCATTTTATAAGGTATCTTACAAGGTGCCAAATCCAAACACAAGACCTTCAATGTCATCCATATACAACCTACAGTGGTGATCTGTAAAGATGTAATAAAGCCATTTGTCATTCTAAAACAATCTGGACAGTTATATCATTTTCCCTGTTTGAGACCTGAAATAATGTCATAGCAGTCACTCTCACACTTCCTGATCATAGGAAAACATTTGTGTACATTTTCTTTTCTGATTCCCATGCTCAACAGAATAGAGGACAGTCTGTCATATTCTATCGTAGTATTTGCATGCTTTCACTAATTTTAGCTCTTTATGTACTAATTGGCCTTTTAAAGCAATCAACAATGTCTAATGGTTTATTTTTTTGCAGGTTTTGACTGTTTCAGTTGTTGTTTTAAAGTGACAGATATGAAAGATGAGTAATTAAATTGATTTTCACTGCTG

Function

GO: NA

KEGG:

id description
K07378 NLGN; neuroligin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490496 lncRNA upstream 16286 70049090 ~ 70049569 (+) True G433121
TU490489 lncRNA upstream 25278 70040350 ~ 70040577 (+) True G433114
TU490483 lncRNA upstream 33533 70032011 ~ 70032322 (+) True G433108
TU490455 lncRNA upstream 33932 70001771 ~ 70031923 (+) True G433080
TU490394 lncRNA upstream 147552 69918063 ~ 69918303 (+) True G433020
TU490792 lncRNA downstream 389002 70737332 ~ 70738303 (+) True LOC110524461
TU492015 lncRNA downstream 451327 70799657 ~ 70800461 (+) True G434565
TU491961 lncRNA downstream 495455 70843785 ~ 70846161 (+) True G434512
TU492052 lncRNA downstream 522894 70871224 ~ 70871447 (+) True G434600
TU492106 lncRNA downstream 605153 70953483 ~ 70953694 (+) True G434650
XM_036978255.1 mRNA upstream 158292 69871717 ~ 69907563 (+) False ect2
XM_036978253.1 mRNA upstream 158292 69871718 ~ 69907563 (+) False ect2
XM_036978254.1 mRNA upstream 158292 69871719 ~ 69907563 (+) False ect2
XM_036978251.1 mRNA upstream 158292 69871720 ~ 69907563 (+) True ect2
XM_021604102.2 mRNA upstream 196529 69776736 ~ 69869326 (+) True mcf2l2
XM_021604123.2 mRNA downstream 107135 70455465 ~ 70738345 (+) False LOC110524461
XM_021604126.2 mRNA downstream 390878 70739208 ~ 70836826 (+) False si:ch211-51h4.2
XM_036978257.1 mRNA downstream 390878 70739208 ~ 70836826 (+) True si:ch211-51h4.2
XM_021604132.2 mRNA downstream 633727 70982057 ~ 71012481 (+) False si:ch211-247n2.1
XM_021604133.2 mRNA downstream 634706 70983036 ~ 71012481 (+) True si:ch211-247n2.1
TU488020 other upstream 1851751 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 1962321 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 2601532 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 2601712 67460729 ~ 67464143 (+) False LOC110524407
TU486149 other upstream 3017691 66981949 ~ 67048164 (+) True G429156
TU492109 other downstream 611280 70959610 ~ 70959932 (+) True G434653
TU492265 other downstream 870459 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 950285 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 1327541 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 2155130 72503460 ~ 72504435 (+) True G436403

Expression Profile