RNA id: XM_021604132.2


Basic Information

Item Value
RNA id XM_021604132.2
length 2089
RNA type mRNA
GC content 0.47
exon number 5
gene id si:ch211-247n2.1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70982057 ~ 71012481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATAAAATGTGTTACCATGGCTCTTACTAGCGACCTTCCTGCATTAACGTAAGAACTTCCTCTATTTCTTCCCTCTTGGAAAAAACACTGGAGGCCCTGCCAGAGTACAACGCCATGAAACAAGACAGTTACGCCAGACAACATCAAGGGAGAGTGGGGTGGTCTCAGCAACCCTGTGTGACGCCCTCTGTGAGTGGTGGCGGGCACAGAGAGTCCTCAGGGAGGATGTTTCTCTGGACAGGAAGTAAAGGAGCTCAGGGATCAGGAGGTGAGAGAAGgACTATTTATCAGAAGGTTCGGGAGTATGACGTGCTAGACAAGAGGAAGACAGTGACAGCACTGAAGGCTGGGGAAGACAGAGCTATTCTCCTCGGACTCAGCATGATCCTTTTCTCTGTGATGATGTACTTTGTGCTGGGCATCACCATGGTGCGCTCCTACTCAGACAGTGTGTGGACAGAGGAATCCAGCTGCGCTGTGCTCAACTCCACCATCGTGGCGGAGATTAACTGTACCTACAGCTGCGGCTCCGAGTGCTGGAAAAGCTCCAAGTACCCGTGTCTACAGGTGTTTGTCAGTCTCAACACATCTGGGAAGGTTGTCCGACTCTCCCACAACGAGGAGGCACAGGACACCAACCCAAAGTGCTTCTATGTGCCCAAATGTCGGAAGGACTACAACGCGATGCACACCGTAATCATGAACATCTCGGAGCGTCTGAAAACACAGCAGCAGGTGTTGTGTTACACGGACCCAGGTGAACAGCAGGAAAGTGCTCTACTGACACGCATATATGGCCGAGTGGCAGTGTTCCATTCACTCTTCTGGCCCACCTGCACCCTCATTGGTGGAACCATCATCATTGCCATGGTGAAGCTCACCCAGTACCTGTCCATCATGTGTGAACAGGTGGGCAGGATCAAAAGGTGAGCGACAGGGCACATAGGACAGGGGCCAGACTACAGTAGCAGCACAGCACTGGTCTTCATTCGCTCCCTAGGAACTTTATGAAAACTCTTCATGTTCCATTTGCGCTAAAGAGAGCTGAGAGCTGAGTGATAGAGTGACAGGGAATCTGGGGGGTTATATTCCTCACATGATTCCTCTGGTTCTTCTGAGGAAAGCAATATGACTGATGTGTGCTCCCGGCAGCTGTGGCAAGGCAAGTGAAACTCAATGACTTTGGGGCACACAGATTTGGTCCTTTTATGCACCTCTACAAGTGGTACAATCATACCACTTGTACAGGTGATTGCTTTAAAGAAGTGGCCAACAATGGACCTGATCTGCCCTTGAACCCAAGTCAGCTTTGGTGATCCATTCACACCGTGACGACAAGGCAGTGACGACAAGGGAGTTTGACCGAGACAACTGTGTCGAAGCCTTCCCCAAAATACATCCAAACTTGGCTCCTCACGGTACTGGTGTTGGGTAGAGGGTTACACAACCCCAGGCGGCTGGGACGAGTCTGGTCCTCTAAGCAAGCTGTTGACCATCTATGTTGTACTCCTGGGTCTGTAGAGACTTCATTCCAAGCTAACAGTTCAAGATCAACACTTTCTTGAAGTATGGTGTAGCAGTAATCACATATCACAATATGTGTTAGTCACTAGGACGCTTAAGTACAATGCAACTTCCCAGGGCAAGTGGTCAATACAAAATGCCTTAATTTCAGGTCCCAACACTGTGGTAGATTGCTCAGAGTTTCAGAAATTAATTCTACAGGACTTTCTCTGAATGGGGTAAACATACTGTGAGGCCAACTACGTTTTCAGGGCCTGGAGCACAAGCCCATAATGGATGTGAGTCATGGTGTGTTTTACCACAAATATTTACAGAATGATGATTGATTGAACACATTCAGAACAAACTAGATAAAAATGTCAATATTTCATTCTTGGTTCCATAATCGCTATTATTCGTTTGTTATTATTTTGCTGTCACAATCATCTCATGTTGTCATCAGCAGTTTATCCATGTCTATAATGTGCTACGCTATTGACTGTTTGACTTGCTTTCTTATCAATTAATGCAAACCAATGTAAATGCAATTTTGTCTTGCATTAATAAATTAAAAGGCAAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492120 lncRNA upstream 10049 70971287 ~ 70972008 (+) True G434664
TU492106 lncRNA upstream 28363 70953483 ~ 70953694 (+) True G434650
TU492052 lncRNA upstream 110610 70871224 ~ 70871447 (+) True G434600
TU491961 lncRNA upstream 135896 70843785 ~ 70846161 (+) True G434512
TU492015 lncRNA upstream 181596 70799657 ~ 70800461 (+) True G434565
TU492169 lncRNA downstream 4924 71017405 ~ 71019437 (+) True G434702
TU492143 lncRNA downstream 53019 71065500 ~ 71066082 (+) True G434682
TU492151 lncRNA downstream 54054 71066535 ~ 71067516 (+) False G434685
TU492152 lncRNA downstream 54054 71066535 ~ 71067883 (+) True G434685
TU492216 lncRNA downstream 137935 71150416 ~ 71151014 (+) True G434747
XM_021604126.2 mRNA upstream 145231 70739208 ~ 70836826 (+) False si:ch211-51h4.2
XM_036978257.1 mRNA upstream 145231 70739208 ~ 70836826 (+) True si:ch211-51h4.2
XM_021604123.2 mRNA upstream 243712 70455465 ~ 70738345 (+) False LOC110524461
XM_021604119.2 mRNA upstream 633727 70065855 ~ 70348330 (+) False nlgn1
XM_021604121.2 mRNA upstream 633727 70065855 ~ 70348330 (+) True nlgn1
XM_036978262.1 mRNA downstream 21539 71034020 ~ 71045983 (+) False pik3ca
XM_036978263.1 mRNA downstream 21539 71034020 ~ 71045983 (+) False pik3ca
XM_036978260.1 mRNA downstream 21540 71034021 ~ 71045983 (+) False pik3ca
XM_036978264.1 mRNA downstream 23789 71036270 ~ 71045983 (+) True pik3ca
NM_001281412.3 mRNA downstream 37575 71050056 ~ 71053212 (+) True lamp3
TU492109 other upstream 22125 70959610 ~ 70959932 (+) True G434653
TU488020 other upstream 2767953 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 2878523 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 3517734 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 3517914 67460729 ~ 67464143 (+) False LOC110524407
TU492265 other downstream 206308 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 286134 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 663390 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 1490979 72503460 ~ 72504435 (+) True G436403
TU494306 other downstream 1983018 72995499 ~ 72995735 (+) True G436588

Expression Profile