RNA id: TCONS_00033591


Basic Information

Item Value
RNA id TCONS_00033591
length 619
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_015584
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32866575 ~ 33029428 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAACGTAATGACGCAAGAGGGCAATATTACGTCGATAGTGTTTGTATTCAAGAAATTTCGTCGAGTGCGGCCTTTAAGCTAACACCAAAttacaaataagtaaaaaaaatggcTGTGTTGTATCATTGCGCAGTTGATCTTGTAGAAAAAGTATTTTATGGAAGACATTTTCTAAACGGACATTGAACTGCGTTTGGGACATGATGAGaggCGGTCATAATGGTTCTTTTGGACAACCAAGTTGATCAGAACTGGCACTGAGTCTCAGTGGAGAGCTGCAGTGGCCCGTCACTTACCGAGCGAAGATGGCTCTGCATCTCAGACTATTTCAAGCTCGCTCTTTCGACCACAGATGTTACATCTTGACTGCTCTATCCAGTTCTCCCTTTGATTCATTTGTGTAAAACTCTGGTAAGtaggatgcaggaagtgaagtgggagaggTTAAATGGATTGAAAAAAAGTCCACAAGCTGGCATTTGAACTCAGAACACCCGGAGTGCTGTTGCACTATATGTCATGACTGGGCACATCGCATCGACtaatatgcatttttaataaaatattatgaagattaattatatgttttaatataacaatatatccATCAAAGTGAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031131 lncRNA upstream 4426 32854201 ~ 32862149 (+) True XLOC_015583
TCONS_00033590 lncRNA upstream 146601 32701820 ~ 32719974 (+) False XLOC_015574
TCONS_00033589 lncRNA upstream 219171 32644925 ~ 32647404 (+) True XLOC_015573
TCONS_00033588 lncRNA upstream 229070 32637080 ~ 32637505 (+) True XLOC_015572
TCONS_00033587 lncRNA upstream 258548 32604867 ~ 32608027 (+) True XLOC_015571
TCONS_00033596 lncRNA downstream 117632 33001203 ~ 33029428 (+) False XLOC_015584
TCONS_00033272 lncRNA downstream 139326 33022897 ~ 33027856 (+) True XLOC_015584
TCONS_00033597 lncRNA downstream 339391 33222962 ~ 33235257 (+) True XLOC_015586
TCONS_00033598 lncRNA downstream 583541 33467112 ~ 33468170 (+) True XLOC_015590
TCONS_00033599 lncRNA downstream 796502 33680073 ~ 33681136 (+) True XLOC_015593
TCONS_00031130 mRNA upstream 15954 32846602 ~ 32850621 (+) True XLOC_015582
TCONS_00031129 mRNA upstream 20251 32843133 ~ 32846324 (+) True XLOC_015581
TCONS_00031128 mRNA upstream 27681 32835679 ~ 32838894 (+) True XLOC_015580
TCONS_00031126 mRNA upstream 32134 32826235 ~ 32834441 (+) False XLOC_015579
TCONS_00031125 mRNA upstream 67492 32796873 ~ 32799083 (+) True XLOC_015578
TCONS_00031135 mRNA downstream 168159 33051730 ~ 33115601 (+) False XLOC_015585
TCONS_00031136 mRNA downstream 168159 33051730 ~ 33175665 (+) False XLOC_015585
TCONS_00031137 mRNA downstream 168598 33052169 ~ 33079331 (+) False XLOC_015585
TCONS_00031138 mRNA downstream 168789 33052360 ~ 33216194 (+) False XLOC_015585
TCONS_00031139 mRNA downstream 306011 33189582 ~ 33194664 (+) False XLOC_015585
TCONS_00031127 other upstream 39322 32826503 ~ 32827253 (+) True XLOC_015579
TCONS_00031124 other upstream 75689 32790363 ~ 32790886 (+) True XLOC_015577
TCONS_00031122 other upstream 106243 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031120 other upstream 159164 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031119 other upstream 163243 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031140 other downstream 306013 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031160 other downstream 872807 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031162 other downstream 1016864 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031163 other downstream 1018754 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031167 other downstream 1043648 33927219 ~ 33933001 (+) True XLOC_015607

Expression Profile

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