RNA id: XM_021604329.2


Basic Information

Item Value
RNA id XM_021604329.2
length 3531
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC110524556
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74405846 ~ 74501105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatggcTCTTTGACAGATCTAGAGTTACACCCTTTCCTAAGTATTACCTGACCAGGTGAAGCCGCTTTGCCTGAAGTGAACGTTGCTCTGTGAGTTCTGTGAGTACTACAACAAACTCTGTGATCAGAATGTATGACTGCTACCTATCTACACAGCTCTGAAGGCTAACACTCCATGGACCTCTACATTCAGTGAAATTCACCTGATCCCCCACAGCACCAAACCAAGCCTCCCTCGGCCAAACTTAGCCCTACCCTCTTCATGAGTAGCCAGGAGGAGGTGCCTGAGATTGCCATGGCAATGGTGATGGCATCATCAcccccaccacaaccaccaccacctgccATGATTGGCTACGGCGGCCTGGAGTCACCTCCCCCTGACCTGTGCCAGACGTGCGGCCAGAGACACCTGATAGAGGAGAACCATGAGTACCTGTACCAAGACAAGGTGGACGATGACCTGATGTGTCATATCTGTCTGCAGCCACTCATCAGGCCGCTGGACACGCCCTGCGGACACACCTACTGCCAGGAGTGTCTGACCAGCTTCCTGCTGGAGAGTGACTTCTGCCCCGTGGACCGCACCCATCTCATGCTGCAGAACTGCCGCAAGTCCAGCCTGCTGGTGCACAAGCTACTGGACAAGCTGGCCGTGGCCTGCCCCTTCTCTGACCACTGCACCGAAACACTGCCCCGAGGAGAGTTGGGGGCTCACATCAAGAATAGGTGTAAAGGTGCGTCTCACTATGGCCTGTCTGCAGACAGGAAGCGGCGTTCCCAGGAGGGTGACTGTACTGACAGCACGTCAGAACTCACCGTTGCCACCCTGCCCGGCGATGGCCCCACCTCTGCTGCTGTTGCCCTCCTATCAGACGATCCCGGCCTTGTCAACCCCGCCTTTGACCCCAGTATGGAGGACAACAGCCAATCAGGCAGCACCACCAGCCTGGCAGCCCGCAGCAGTACCAAAAAGAGTGATTGTGAGTTCCGAAACTATGACCGCACCTCGGTCAGGAGCCGCTCCTTCAGGCGGTTGAACCGTGCATTCAGTGTCCTGCGGAGGACCAAGAGTGGCACATCCGTGTCGAATGAGACCGCAGAGGAACGAGACAATGCGAGGAACGCCAGTGTGCCGCAGGAAGTGCTGGCTCTACCCCAGCTCCATCACCTGATCCCTGATGGTGAGGTCACCAGTATTAAGATCAACCGTGAGCCCTCGGAGCCCCTGGCCATCAGCATCGTGGGGGGCAACGAGACCCCCCTGGTGCGTATCctcatccaggacatctacagggaGGGGGTAATCGCCCGGGACGGACGCCTGCTGCCCGGAGACATGATCCTCAAGGTGAATGGCATAGACATCAGCAATGTGCCCCACTGCTACGCCCTGGCCACACTCAAACAGCCTTGCCAGCTGCTGCGACTCACAGTGCTGAGAGAGCAGCGCCACCGTTACCGCTCACACTCGGGGCACCACGGGCACCCCCACGACGCAGCCGGGGGCTACCCGCCTCATGGCCTCCCCCATGGCCAGCCCTTGAGGGACGACAGCATCCACGTGGTCCTGGCTAAGAGCACCCCAGAGGAGCAGCTGGGCATCAAGCTGGTGAGACGACCAGAGGAACATGGAGTCTTTATCTTCCACCTGCTGGAAGGCGGCCTGGCGGCACACGATGGGCAGCTCAGCGTCAACGACCGCATCCTCGCCATCAACGGACACGACCTGCACTACGGAGCGCCAGAACACGCCGCTTTACTCATCCAGGCGAGTGAGGAGCAGGTCCACTTCATAGTGTCTCGTCAGATCTGTTTACCCACGCCTGACATTCTGCAGGAGGCTCCATGGGGCATGGACGGCCCCCCTCCATACTCCCCAGTGGACATGGAGCATACGCTACTGGACTCATGTGAGAAGCCGGCATGTTATGAGAAGACGGTGACGCTGGCCAAGGAGCCCCATGACTCCCTGGGGATGACAGTGGCAGGGGGCATGTCCTCCCGCGGCTGGGATCTCCCTGTCTACGTCACTAACGTGGACCCCAACGGAGTGGTGGGACAGGAGGGATCCATCCGCAAAGGTGACATCCTGCTGAACGTTAACGGGCTGGACCTGACGGGGGTGACGCGGGGCGAGGCTGTGGCCAACCTGAAGAACACCACCTCCCCCGTGGTGCTCAAGGTCCTGGAGATGAGGCCTCCGGAGGAGAGCCAGCCAGAGTTCCCCTCGCCACCCTGCCTCTCACACTCGCCCACCGACAGCACCAAGCAGAACCTTGCAAAGCTGCCACACACCGATGACTACTCACCACTGTGGGTGTCATGGTTGCAGCTGCCCAGGCACCTGTACTGCTGCAAAGACATTGTGCTGCGCCGGAGCACCTCAGGCAGCCTGGGCTTCAGCATCGTGGGGGGGCAGGAGGAGGTCAACTGCAATCAGTCCTTCTTCATCCGTTCCATCGTGGAGGGCACACCAGCCTACAACGACGGCAGGATACGATGTGGGGACATTCTGCTGGAGGTGAATGGCAAGAGTTCGTGGGGGATGACCCACACAGCCCTGGTGCGTCTGCTGAAGGAGCTGCGGGGCAGAATCACCCTGACCATCGTGTCCTGGCCTGGAAGCCTGCTGTAGCCCCGCTGCAGCCACAGGGAGGGGCCAACACTGACCCAGGAATGTGGGCAGAGCTTTTAACTGGATTATAACACTGAGCCCTACCGTATGGGATGGGCTTTCACTAGTGATGTAGCTATGGAAGGCGGACCTTAAGAACCCTGACTCCTGATGGACAGCTGAGACTTTGCTAGGAGTTCAGAAGAGGCCAACCATCCATGTGACTGGAATTTGACCAAACTCCCCAGAGACACTGAGCTGGGTGGAGCTGGATCTGTGGCCCTACCCCTGGGATGTTCGGAGCAATCTGATTGGAGGAGAGGCTTGTTCGATGGCAACGCATCCAATgaggggggtgggtgggtggttgggaGGGGACACAAGTTGCCAATTCCATTGGTTCTATGTTAGGGTATGCATTTCATTGGACTCACATTTCTTTATTGTAAATGTTGGCTATCTAAAAAAATACTGACTCAAGCAATTGTactatgtttctatttctttcAATGATTGTTTGATGGCCTTTCAATATAGGCTTTATTACGTTTGTATTAACAGTGGTCATCATCTTCATCTGTTGGACTGAAGACACATTGCCACATAGCCGTTTGTGTTGAGATGTTTTCAGAAGCTGTTGCTAAATTATCAAAACACTGGCAAAAGTatagtaaaaaaaacaagtaaAATTGTGTTCATAATCTGTTAAAAGTAATATTAAGGTGACATCGTGGAGGCCTTACTGATTTTCCTACttttgaaaagaaaaaaaaaacctgaCTTGGTTTCTGTGTGTTTCCGTGGATGTGTCTGGTCTAGGGCCATTTAACGCAGTTCTATCACATGCTTCGGCCTGCGTAGTATATCTGATGGTACCTTTTGGTAACATAATCAATAAAGTCATTGGAAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496278 lncRNA downstream 188400 74212390 ~ 74217446 (-) True G438307
TU496277 lncRNA downstream 189163 74209798 ~ 74216683 (-) False G438307
TU495926 lncRNA downstream 295609 74110008 ~ 74110237 (-) True G437992
TU495925 lncRNA downstream 296179 74109443 ~ 74109667 (-) True G437991
TU495886 lncRNA downstream 335967 74069535 ~ 74069879 (-) True G437954
TU496445 lncRNA upstream 15113 74515961 ~ 74516300 (-) True G438447
TU496450 lncRNA upstream 19978 74520826 ~ 74521029 (-) True G438452
TU496554 lncRNA upstream 96316 74597164 ~ 74597493 (-) True G438553
TU496555 lncRNA upstream 97134 74597982 ~ 74598214 (-) True G438554
TU496569 lncRNA upstream 109402 74610250 ~ 74610861 (-) True G438568
XM_036978386.1 mRNA downstream 51753 74122303 ~ 74354093 (-) False LOC110524553
XM_036978387.1 mRNA downstream 51753 74122326 ~ 74354093 (-) True LOC110524553
XM_036979058.1 mRNA downstream 330255 74062228 ~ 74075591 (-) True LOC110523002
XM_021604322.2 mRNA downstream 389808 74009042 ~ 74016038 (-) True sgcb
XM_021604321.2 mRNA downstream 397277 73993983 ~ 74008569 (-) True LOC110524549
XR_005051858.1 mRNA upstream 306358 74807206 ~ 74820307 (-) False LOC118964644
XR_005051859.1 mRNA upstream 306358 74807206 ~ 74820307 (-) True LOC118964644
XM_021604345.2 mRNA upstream 347982 74848830 ~ 74857210 (-) False LOC100135915
XM_021604339.2 mRNA upstream 347982 74848830 ~ 74891311 (-) False LOC100135915
XM_021604340.2 mRNA upstream 347982 74848830 ~ 74891311 (-) False LOC100135915
TU495056 other downstream 995507 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1258718 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1258718 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1258718 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 1280808 73122112 ~ 73125038 (-) True G437074
TU497050 other upstream 364411 74865259 ~ 74927797 (-) True G439002
TU497119 other upstream 462612 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 762625 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 1070401 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 2085610 76586458 ~ 76590370 (-) True G441168

Expression Profile