RNA id: XM_036978399.1


Basic Information

Item Value
RNA id XM_036978399.1
length 821
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110522887
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74901557 ~ 74911349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGCAGTGTAGTGTCATTGATGTAGAGAGGGGGTGACCTCGTGCTTTAAAATTGTTCCCGTGAAATATTATAAATCACAGATCGGCTAGAACATAAACCAAGAGCAACCAGAGAACGGTAATGATGAAGACCTCTCAGTGCCAaaccagagtctctcagagcggcAGCGCGAGCTACGTGAGCGTTCTCAGCACCAGCGCAATGAACACGCTCAGCAGCACGAGCCTCACGCTTCttgttctcctcctctcagcgATCCCAGTCTGCAAAAGTGTTCCAATACAAGAGCAGAGAGCAAATATATACCAGGACCAGCTTCTCAACCAGCTTGAAGATGTGTGCTCATCCTACTTTTCTGCAGACCTGCCATTTCGGGACATGAAAGTGCGGGACAATCCTAGTAAAAGGTTTTTATTTCATTATGCTAAGCAACAAGGTGCTGGCCTAACAGAGGGGGCGTCCCCTGTGATGCATCCTCTCCTGCAGCTAGTTCCTCAACTCAATACcagacgagagagaggagaggagtttgtGGTCCGCGATGATCTCCAAGGACCTGAGGGAATTCAGAGCAGAGGATACTTCTTATATCGGCCAAGAAATGGAAGAAGATCCCTAGAATTTGATTAAATATAAGGTATGGGGTATTGAACTGAACAGCCACAACCTTCATAGAGTGGTCCAGACCTCTGCCACAACCCCTTAATGATCATTGTACAGTGATGTTGAATGTACACAATGAAATTAAAGAATCCAAATAAAATTGTCTTTGTTGGTCCAAAAGTCTTATTTGTGTTACGAGGTGTCTTGAATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496994 lncRNA downstream 54943 74844036 ~ 74846616 (-) True G438951
TU497004 lncRNA downstream 65454 74835494 ~ 74836105 (-) True G438959
TU497001 lncRNA downstream 125357 74775199 ~ 74776202 (-) True G438957
TU496996 lncRNA downstream 130167 74770467 ~ 74771392 (-) True G438952
TU496711 lncRNA downstream 192617 74708660 ~ 74708942 (-) True G438696
TU497060 lncRNA upstream 20826 74932171 ~ 74934342 (-) True G439012
TU497118 lncRNA upstream 50762 74962107 ~ 74962485 (-) False LOC110523004
TU497120 lncRNA upstream 53416 74964761 ~ 74965137 (-) True G439065
TU497132 lncRNA upstream 81791 74993136 ~ 74999899 (-) True G439076
TU497163 lncRNA upstream 133682 75045027 ~ 75094005 (-) False LOC110524567
XM_021604341.2 mRNA downstream 10248 74848830 ~ 74891311 (-) False LOC100135915
LOC110523004 mRNA upstream 50032 74961377 ~ 74968484 (-) False LOC110523004
XM_021604358.2 mRNA upstream 115263 75026608 ~ 75036101 (-) True LOC110524565
XR_002473612.2 mRNA upstream 137100 75048445 ~ 75049425 (-) True LOC110524566
XM_021601280.2 mRNA upstream 171121 75082466 ~ 75091633 (-) False LOC101268909
XM_021601281.2 mRNA upstream 171121 75082466 ~ 75091633 (-) False LOC101268909
TU495056 other downstream 1491220 73370608 ~ 73410339 (-) True LOC110524526
TU494857 other downstream 1754431 73146358 ~ 73147128 (-) False G437079
TU494858 other downstream 1754431 73146358 ~ 73147128 (-) False G437079
TU494859 other downstream 1754431 73146358 ~ 73147128 (-) True G437079
TU494844 other downstream 1776521 73122112 ~ 73125038 (-) True G437074
TU497119 other upstream 52115 74963460 ~ 74963696 (-) True LOC110523004
TU497719 other upstream 352128 75263473 ~ 75265403 (-) True G439594
TU497923 other upstream 659904 75571249 ~ 75575569 (-) True G439788
TU499371 other upstream 1675113 76586458 ~ 76590370 (-) True G441168
TU499702 other upstream 1991037 76902382 ~ 76902771 (-) True G441483

Expression Profile