RNA id: XM_036978467.1


Basic Information

Item Value
RNA id XM_036978467.1
length 8015
RNA type mRNA
GC content 0.53
exon number 37
gene id ptprfa
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78642382 ~ 79041656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGGCTGAGGCTGGGCTGGCCTGTTCAGAGCTCAGTGGGTATTCAGTTGAGAGTGTCTCAGGAGACATCGAGCTCCAGTGACCCCAGCAAGACTCCCAGGATTCAGTGGAATCTCTATGGACGGTGGCCTGTTCACACAGCACAGCAAGGAGACCAGGCAGTGGCAGGCAGTTAGAGAAGCTCCAGCCAGAGGAGTTAGACTAGAGAGCAGTTCATTTGAAGTGCTGCAACCTTCCTTCTTTCCCTGCTTCTTTGCCTCCACCTGTAGCGGCTAGCCCCAACCACCCGGGCTAtttcacacgctctctctctctctctctctgggactgCAGACTGACTGAGCTTTTATGCTAAAGGACTAAAGGATTTTGTGTGGAgtctttttgtattttttttaggaATAATATCACAAGTTTTAAAGACTATCAGTTTCCTGGTGAGTTTCTTTCACTGTGTATTTTTCAGTTGGACCTTGAAATGGGTGTCACTCTATGATTGCGTGAGCTGCTATCTATCGAGCAGAGCGGGAGTGTAggtagaggagcagaggagaggcgTGCCAACACCTGCACCATGGCACTGAGCCACCGATGGGCACAATCTCCCCTCGCGAGGGGGGCCACATTTATCCTACTACTGGGCAGTCTGGCCCTGCCATCACCATCCCACGCAGACAgcatGCCCAATTTCATCAAATCTCCAGATGACCAGACAGGTATTTCGGGAGGAGTGGCATCCTTCGTTTGCCAGGCGGTGGGTGATCCCAAGCCACGCATCACCTGGATGAAGAAGGGCAAGAAAGTCAGTTCTCAGCGCTTTGAGGTGATAGAGTTTGATGACGGTTCAGGGTCCGTCCTGCGTATCCAGCCCCTGCGGACCCACAGGGACGAGGCCATCTATGAGTGTACTGCCACCAACAGTGTGGGAGAGATCAACACCAGCGCCAAACTCACCGTCCTGGAAGAGGACCAGATCCCTCATGGGTTCCCCACCATAGACATGGGTCCCCAGTTGAAGGTGGTGGAGAAGACCAGGACAGCCACCATGCTGTGTGCTGCCAGTGGCAACCCTGACCCAGAGATCTCCTGGTTCAAAGACTTCCTCCCTGTAGATATCAACAGCAGCAACGGTCGAATCAAACAGCTCCGCTCAGGAGCTCTCCAGAtagagaacagtgaagagtcCGACCAGGGCAAGTACGAGTGTGTGGCGGTCAACAGCGCCGGGACCCGCTACTCGGCTCCGGCTAATCTCTACGTGAGAGTGCGCCGCGTGCCACCCCGGTTCTCCATCCCGCCCACCAACCATGAGGTGATGCCGGGTGGCAGCGTGAACCTGACGTGTGTGGCAGTGGGAGCGCCCATGCCCTACGTCAAGTGGATGATGGGAGTAGAAGAGCTGACCAAGGAGGAAGAGATGCCCATTGGGAGGAACGTGTTGGAGGTCACCAACATCCTCCAGTCTGCCAACTACAGCTGTGTAGCGATATCGTCACTCGGCATGATCGAGACCACCGCGCAGATCACTGTCAAAGccttgcCCAAGCCCCCCACCTCCCTGATCGTGACGGAGACCACAGCCACCAGCGTCACCCTGACCTGGGACTCTGGGAACCCTGAGCCCGTGTCCTACTACGTCATCCAGTACCGGGCCAAGGTCTCTGACAACAGCTTCCAGGAGGTGGATGGGGTAGCCACCACGCGCTACAGCATTGGAGGCCTCAGCCCCTACTCCGAGTACGAGTTCCGCGTCATGGCGCTGAACAACATCGGGCGTGGCCCTCCTAGCAGCCTCGTGGACACCAGGACCAGTGAGCAGGCTCCATCCTCTCCACCGCTAGCTGTACAGGCTCGCATGCTCAGCGCCTCCACCATGCTGGTCCAATGGGAGCCGCCTGAGGAGCCTAATGGACAGATCAGAGGGTACCGGGTGTACTACAGCTCGGACCTCAGAGCCCCACTGAGTGGCTGGCAGAAACACAACACTGACGACAGCAGACTAACCACCATCTCAGGGCTGACCACTGATATCACCTACAGCCTCAGGGTGCTGGGGTTCACCTCTGTAGGGGACGGACCTCCCTCTGATGTACTGCAGGTCAAGACCCAGCAGGGAGTACCAGCCCAGCCATCTAGTTTCAACGCCGAGGCAGAGTTGGACACCCGCATCATGCTGTCGTGGCTGTGGCCTGTCCAGGACCAGATCACCAAGTATGAACTGATGTATTGGGAGGCTAACTCTGGCAACAAGCTCCATGTGACCTTCCTTCCAGCGGGGTCCTATGCTGTGGAGGGTCTGAAGCCAGACACCCTCTACATGTTCTCCCTGGCTGCTCGTTCTGAAATGGGCCTGGGCGTCTTTACCCAACCCATCGAGGCCAGGACTGCCCAGTCCACCCCCTCAGCCCCGCCCCAGGAGGTGCACCTTCTGAGCCTCAGCTCCACCAGCATCAAGGTGAGTTGGGTGGCACCCCCTGCAGCCAGCCGCCATGGGGACATCGTCCGCTACTCTCTGGCCTACCAGGCCGCCACCGGCGAGGACCTGGAGCGCCACAAGGTGTCGGGCATCAGGGCAGATGTTTCTAGTTATATCCTGGAGGGCCTGGAGAAGTGGACAGAGTACCAGGTGTGGGTCAGGGCTCACACGGACGTAGGCCCAGGCCCAGAGAGCCCCGCGGTCAGGATCAGGACCAAGGAGGATGTGCCTGGAGCTCCACCCAGGAAGGTGGAGGCTGATGTCCTGAACTCCACAGCCCTGAGGGTGACGTGGAAGCCCCCCCTCCAGGTGAAGCAGCATGGCCAGATCAGAGGGTACCAGGTGGTCTACTCGCGACTGGAGAACGGAGAGCCACGAGGCCAGCCCAGCATCATGGATGTCTCCCTACCTGAGGCACAGgaggctgttataacaggcCTGCTCCCTGAGACCACCTACTCGGTCACCGTGGCAGCCTACACCACCAAGGGGGACGGGGCACGCAGTAAGGCCAAGGTGGTCACCACCACTGGAGCAGTCCCAGGCAGGCCCACTATGATGATCAGTACCACCATTGGTAACACAGCCCTCATCCAGTGGCAACCACCGAAGGAGATGGTGGGAGAGCATGTTGGCTACCAGCTTCAGTACAAACGTATGGAGGAGGAGTCGTTCACTGTAAAGGACTTCAAGAAGACAGACGACCACTTCACTGTCACCGGCCTGCACAAGGGCGCCACGTACGTCTTCAAGCTCTGCGCCAAGAACCGGGCGGGCACCGGCGAGGAGTATGTGAAGGAGATTACGACGCCGGACGATGTGCCCAGCAGTTACCCCCAGAACCTGAGTGTCGTAGGCCTGACCACGACTACTACCAAGCTGGCCTGGGAGCCTCCGGCGCTGGCTGAGAGGAACGGGAGGATCGTCCAGTACGTGGTGGTGTACAGAGATATCAACAGCCAACAGAACCACACCAATAGCACGATAGAGACTCAGATGACCATCATGGGGCTGCAGCCTGATACCACCTATGACATCAGGGTCAGGGCTTTCACCAGCAAGGGAGCCGGACCCAACAGTCCTAGTATTCAGAGTAGGACCATGTCTACCTCCATGCCTGAGTTCACCAAAAACTTTGGTGTGAAAACTGTGATGAAGACCTCTGTCCTGCTGACTTGGGAAGTGCCAGAAACCTACAAGTCTCAAGTGCCTTTCAAGATCCTGTATAACCAGCAGAGTGTGGAGGTGCAGGGGAACCTGAAGAGGAAGCTGATCACGAGACTGCAGCCAGACACAGACTACAGCTTTGTGTTGATGTCTAGAGGGAACAGTGCTGGGGGTCTACAGCAGCAGGTCTCCATCAGGACCGCCCCGGACCTGCTCAAGACCAAACCCATCCAATACCAACACCACCCAGAGGAGGGGGGCAAGCTCACCATCACCCTACCCAGAGTCCCCACCACCGCCCCTGTCAGaTGGTACTATATAGTGGTGGTTCCTGTCACACCAGCCACACTACGTAGGTGGGAGAACCCTGAAGATATGGACCTGGatgagCTCCTGGAGGCTAGTTCTGACCAGAGCCTGAGAAGGAGGAGACAGACCCAAGAGTTCCTCAGACCCTACATCGCTGCCAAGATGGACAATCTGCCAGACACCTTCACTCTAGGAGACGAGAAGAAGTACAACGGCTTCTACAACAAGCCTCTACCGGGACAGCAGCAGTACCTCTGTTTCGTCCTGGCTGCCCTCAAAGACCACGAGTCTCAGAAGACGTTTGCGGCCAGCCCGTACTCAGACCCCATCACGGTGAAGCTCCACAGTGGTATGCCCCTCCATGCTGAGGACCCAGAGATGCTGTGGGTCATGGGCCCTGTCCTGGCTGTTgtactcatcatcatcatcgtcatcgcCATCCTGCTCTTCAAGAGCAAAAAAGAAAGgAAACGAGCATCTCCCTCGGCCAAGGATGAGCACTCTGCTGGGGTGAAGGACTCTCTGCTGGCCCACTCCTCTGATCCTGTGGAAATGAGACGACTCAACTATCAGACACAagGTTCCAGTGACCCCAGTTGCCCGAACACTCCAAGGATGAGGGAGCACCCTCTCATCTCCACCACTGATCTTGCTAACCACATCGAGCGTCTCAAGGCCAACGACGGACTCCGCTTCTCACAGGAGTATGAGtctgtagaCCCTGGCCAGCAGTTCACATGGGAACACTCTAACCTGGAGGTGAACAAGCCAAAGAACCGCTATGCAAACGTTATCGCCTATGACCACTCCAGGGTCATCCTCGCCTCTGTCGACGgagtaccaggtagtgaCTACATCAACGCTAACTACATAGACAGCTACAGGAAGCAGAACGCCTGCATCGCTACACAGGGCCCGCTTCCTGAAACCCTGAGTGACTTCTGGAGGATGGTGTGGGAGCAGAGGACCAACACTATCGTCATGATGACCAGACTGGAAGAGAAGTCACGGGTGAAGTGTGACCAGTACTGGCCCAGTCGGGGTACAGAGACTTATGGGATGATCCAGGTGACCATGTTGGACACTGTGGAGCTGGCTACCTACAGCGTACGCACCTTCGCCCTCTATAAGAATGGCTccagtgagaagagagaggttcGTCAGTTCCAGTTCATGGCCTGGCCGGACCATGGAGTGCCTGAGTACCCCACCCCCACCCTGGCCTTCCTCCGCAGGGTCAAGTCTTGCAACCCCACAGATGCAGGACCCATGGTGGTCCACTGCAGTGCTGGTGTAGGTCGGACCGGTTGCTTCATCGTGATTGAGGCCATGCTGGAGCGTATGAAGCATGAGAAGTCAGTGGATATCTACGGTCATGTGACGTGTATGAGAGCTCAGCGGAACTACATGGTGCAGACGGAGGACCAGTACGTCTTCATCCACGAGGCCCTGCTAGAGGCAGCCACCTGCGGTAACACAGAGGTCCCTGCACGCAACCTGTACGCACACATCCAGAAACTCACCCAGGTCACGCCCGGAGACACGGTCACTGCCATGGAGCTAGAGTTTAAGAAACTGGCCAACTCCAAAGCACATACCTCAAGATTCATCAGTGCCAACCTGCCCTGTAACAAGTTCAAGAACCGGCTGGTGAACATCATGCCTTTTGAGTCCACCCGCGTGAGTCTGCAGCCTATCAGAGGAGTGGAGGGCTCCGACTACATCAACGCCAGCTTCATCGACGGATACAGGCAGCAGAAGGCCTACATGGCCACCCAGGGGCCGCTAGCAGAGACCACAGAGGACTTCTGGAGGATGCTGTGGGAACACAACTCTACCATCGTAGTCATGCTTACTAAActcagagagatgggaagagAAAAGTGTCATCAGTACTGGCCAGCTGAGCGTTCTGCCAGGTACCAGTACTTTGTAGTAGACCCCATGGCTGAGTACAACATGCCCCAGTACATCCTCAGAGAGTTCAAGGTCACAGACGCCAGGGATGGCCAGTCTAGGACCATTCGGCAGTTCCAGTTCACTGACTGGCCAGAACAAGGAGTGCCAAAAACTGGAGAGGGCTTCATTGACTTCATTGGTCAAGTGCATAAAACCAAGGAGCAGTTTGGCCAGGATGGACCAATCTCTGCGCACTGCAGTGCTGGTGTTGGGCGGACTGGTGTGTTCATCACCCTGAGTATCGTGCTGGAGAGGATGAGGTACGAGGGGGTGGTGGATCTCTTCCAGACTGTCAAGACACTGAGGACCCAGAGACCTGCCATGGTGCAGACAGAGGACCAGTACCAGTTGTGCTACAGGGCAGCTCTAGAGTACCTTGGAAGCTTTGACCACTATGCAACATAATAACCACTCCCAGAATGCACTGGGACTCCTGGGGTTCAGGAGCGCCAGCCGTGTGTCCCTTCTGAGCTATATCCATACTGTCCAGAAACTGccggaggggagagggggaggaagagaagaagaggagtgaggaggagtgggagagagcacATGTCTGACTGGATGACCGTCAATCAGGTGGAGCAGTACTCCTGGACTGACTGCACAATAAACCTGCTTTAAAATCCTTCACTACTAAAAAATAACCTAAAAAGCTTCAGTATGCTTCATTCTGATGTCTCTATAGCTAATGCACATGCCATGAAAACACTATTTCTGCCTCCTCCACCTGCTTATATGGCAAACTTTATTTTTCTGCTTTCATTATGCATTAATATCATTACTATTACCCATTATaaatatgttattattattattatttagaattTGTTTTCTAATCATTTATACACTGGTTATTGTATGTCTTATTGGGTCTTATTTTAAATTCAATATTTGtatctttttattattttttacacaaGGGACATGTATTTTAAACATGCTTCGAGTTATTATTAATACTGGAGACGTACGCATACTCAGAGCTGCTAATAATATTTTACTTTTTTTACCATAATTATAACATTCTAAAGTTCTCTATTCTCTGGTTGGTCGTATTCAGTGGGATATGGGGGACACGACTTTTAGAAGTATTTTCACTTCCTGGTACTTTACAAAAACAATCTCCACAAAAAGAGATCAAACACATATACACCAGAGTTAGTGAACTACTATAAAATAAACCCATCTATGTTTATACAAACTGAATAGATTATTCTTGATGATGTTTTATGAATAATCTACCATGTACAGATTCTGTTTACTGTGATTTTCTCAATGCCTGTCGCTCAAAGAGCTCCGGTCCAAACTCCAGACGcaatgaaagaaataaagaaactacCGGTACATGAAAAGGTGTTTGTCCTGTTACAGCACCCTTAGTTGCCCATGGGACTGAACCAAACCATCACTCCCAATAGACACAGAGGAACTGGACCCTAGCTCTGTCTGCTCTGATCTGACAAGCTAGACCTGGTTTGGAGCAACAGATATACAGAACTTCACATCAGACTAATGTACAGCGCCCAACAACACCCCTCCTATGAGAAGTGTTCGAGTGACCAGACAGACAGTTATCCATCCCTGTATTTCTGATTACCCTGCTGATTCTGAACTATGATCTATGAATTGGACATGTCCATCTGCATACGACTGACCTAGTTCCCCATGACTGGCCATCCCTGTAGAAACCTGACAACAACCCAGATGAACATCTCTTCTGACTGTCACTGACTCTACATCCATGGTATAActgctgtaatatactgtattatcTCCTCACTGTGCTACAGAAGGACATTTTCCTGTAACACAAAGAAGCAGCATCAATGTACGGTGGAGGATCTCTACATTATAGTCAAGCGTTTTTCTCTTAAGTGAGGCTATAGGATTGCAAAGTGAGGTGAATTTGGATTGATTGGGCCCGGATGGACGGACTGCAAAAACAAGGATTTATTTCACTTTGTCTTCAAATAGTGCCGTAGGGGTTCAGTCTGTTGTATACACAATCTGTTTTCTATTTGTTAATAAAAAGGAGAGGGAAAAAATGTCACAAAAACCTTGATGTTAATAAAGTTgaataattgttttttttatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502025 lncRNA upstream 21206 78731605 ~ 78734382 (+) True G443552
TU501931 lncRNA upstream 124836 78630435 ~ 78630752 (+) True G443468
TU501893 lncRNA upstream 150710 78604559 ~ 78604878 (+) True G443431
TU501882 lncRNA upstream 163977 78591055 ~ 78591611 (+) True G443420
TU501870 lncRNA upstream 174214 78581097 ~ 78581374 (+) True G443408
TU502222 lncRNA downstream 54614 79096270 ~ 79125828 (+) True G443735
TU502225 lncRNA downstream 56973 79098629 ~ 79099241 (+) True G443737
TU502249 lncRNA downstream 111927 79153583 ~ 79153823 (+) True G443761
TU502250 lncRNA downstream 112206 79153862 ~ 79154226 (+) True G443762
TU502268 lncRNA downstream 138088 79179744 ~ 79180038 (+) True G443780
XM_036978455.1 mRNA upstream 375923 78358085 ~ 78379665 (+) True LOC110524625
XM_036978454.1 mRNA upstream 410675 78330068 ~ 78344913 (+) True LOC110523011
XR_005051591.1 mRNA upstream 436667 78315926 ~ 78318921 (+) True LOC118964534
XM_021604461.2 mRNA upstream 467496 78277358 ~ 78288092 (+) False LOC110524622
XM_036978477.1 mRNA downstream 708 79042364 ~ 79061364 (+) False LOC110523012
XM_036978478.1 mRNA downstream 1908 79043564 ~ 79058836 (+) False LOC110523012
XM_036978479.1 mRNA downstream 2009 79043665 ~ 79061364 (+) True LOC110523012
XM_021604470.2 mRNA downstream 20533 79062189 ~ 79141985 (+) False st3gal3a
XM_021604472.2 mRNA downstream 20533 79062189 ~ 79141985 (+) False st3gal3a
TU501262 other upstream 497132 78245839 ~ 78258456 (+) False LOC110524622
TU501263 other upstream 497132 78245839 ~ 78258456 (+) False LOC110524622
TU501264 other upstream 497132 78245839 ~ 78258456 (+) False LOC110524622
TU501265 other upstream 497132 78245839 ~ 78258456 (+) False LOC110524622
TU500530 other upstream 1172361 77558330 ~ 77583227 (+) True G442273
TU503801 other downstream 1174822 80216478 ~ 80217090 (+) True G445204
TU503808 other downstream 1193224 80234880 ~ 80235428 (+) True G445211
TU505099 other downstream 2854148 81895804 ~ 81897781 (+) True G446381
TU505814 other downstream 3382542 82424198 ~ 82442223 (+) False G447001
TU505812 other downstream 3399319 82440975 ~ 82442223 (+) True G447001

Expression Profile