G443420


Basic Information

Item Value
gene id G443420
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78591055 ~ 78591611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU501882
gtgaatatttatattgctatttctgactaatgttgactacacaatatggcggatatctttttggctgctttgttgtctgaacgctgtactcagattattgcatggtttgctttttccgtaaagtttttttgaaatctgacacagcgtttgcattaaggagaagtatatctctaattccatgtataacacttgtattttcatcaacatttatgatgagtatttctgtgaattgatgtggctctctgcacaatcaccgcatgtttatgaactactgaacgtaacgcgccaatgtaaaatttgattttttgatataaatatacACTTTATCgagcaaaacatacatgtattgtgtaacatgaattcctatgagtgtcatctgatgaagataatcaatggttagtgattaattatatctctatttgtgctttttgtgactcctctctttggctggaaaaatggctgtgtttttctgtgatttggtggtgacctaacataatcgtttgtggtgcttatgctgtaaattatttttgaaatcagataatgtggctggattaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU501882 True 557 lncRNA 0.34 1 78591055 78591611

Neighbor

gene id symbol gene type direction distance location
LOC110524625 LOC106560333 coding upstream 211390 78358085 ~ 78379665 (+)
LOC110523011 LOC106560333 coding upstream 246142 78330068 ~ 78344913 (+)
LOC118964534 LOC106560333 coding upstream 272134 78315926 ~ 78318921 (+)
LOC110524622 LOC106560333 coding upstream 302963 78245839 ~ 78288092 (+)
LOC118936475 LOC106560333 coding upstream 313753 78270127 ~ 78277302 (+)
ptprfa ptprf coding downstream 50771 78642382 ~ 79041656 (+)
LOC110523012 kdm4a coding downstream 450753 79042364 ~ 79061364 (+)
st3gal3a st3gal3 coding downstream 470578 79062189 ~ 79141985 (+)
LOC110524632 artn coding downstream 565400 79157011 ~ 79189367 (+)
rad54l rad54l coding downstream 600563 79192174 ~ 79200180 (+)
G443408 NA non-coding upstream 9681 78581097 ~ 78581374 (+)
G443315 NA non-coding upstream 95198 78495635 ~ 78495857 (+)
G443016 NA non-coding upstream 161951 78426613 ~ 78429104 (+)
G442983 NA non-coding upstream 187635 78375101 ~ 78403420 (+)
G442961 NA non-coding upstream 251542 78339301 ~ 78339513 (+)
G443431 NA non-coding downstream 12948 78604559 ~ 78604878 (+)
G443468 NA non-coding downstream 38824 78630435 ~ 78630752 (+)
G443552 NA non-coding downstream 139994 78731605 ~ 78734382 (+)
G443622 NA non-coding downstream 253006 78844617 ~ 78875830 (+)
G443636 NA non-coding downstream 272348 78863959 ~ 78864244 (+)
G442273 NA other upstream 1007828 77558330 ~ 77583227 (+)
G441903 NA other upstream 1322289 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 3412768 75161317 ~ 75178287 (+)
G438719 NA other upstream 3814586 74772009 ~ 74776469 (+)
G445204 NA other downstream 1624867 80216478 ~ 80217090 (+)
G445211 NA other downstream 1643269 80234880 ~ 80235428 (+)
G446381 NA other downstream 3304193 81895804 ~ 81897781 (+)
G447001 NA other downstream 3832587 82424198 ~ 82442223 (+)
G447020 NA other downstream 3860995 82452606 ~ 82458383 (+)

Expression


Co-expression Network