RNA id: XM_036979063.1



Basic Information


Item Value
RNA id XM_036979063.1
length 836
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC118964723
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80247693 ~ 80264560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTATAAAGTCACCAGCTTAGCGctgatatggctgtagctctatttatgatgtcctctgcacagatctactctgacattgacatattattacttattggaatgtctgtccttcaggtagcacagagggaggatggtgatcctcagagggaaggaaaggaagttGTTGAGGAAGAACCGGTGGCCACACCCAAAGAGGAGGCCAAGAAGGGAAGGAAGgcAAAAAGTAAGAGGAGTGGCAAGAAGTCAAGGAAGCTGGGCACTGACAATGATGCAGTCTCCAGGAATAAACACCTGGATAGAGGACCTGTAATTGAGCTCCTGGAGAAGAAAGCTGTTAAGGCTGCATTCGGCCCAGGCAACAAGGATGAGATGGAATACTCctacccaatcctcatctcattcctgcgcaatcttactgatgagcagtggcaagtgatctacaaaggactaaaaaaccctatgacgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGAcgacactgactcacccaagaggggtggcagtgcaagatcctttgctgcctttgatcaggaaagactggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGGTATGTTCCCCTCAAGGTTTTCATGTATGGATTTCACCGAGATCATCTATCCCAGTGTTAGCCAATGCAATTTACTCTATCTGATGTAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU503814 lncRNA downstream 4742 80242586 ~ 80242951 (-) True G445217
TU503803 lncRNA downstream 26800 80220638 ~ 80220893 (-) True G445206
TU503799 lncRNA downstream 46450 80200950 ~ 80201243 (-) True G445202
TU503788 lncRNA downstream 75072 80172237 ~ 80172621 (-) True G445191
TU503783 lncRNA downstream 75660 80171543 ~ 80172033 (-) True G445189
TU503822 lncRNA upstream 40527 80305087 ~ 80305701 (-) True LOC118964724
TU503823 lncRNA upstream 47040 80311600 ~ 80311884 (-) True G445225
TU503824 lncRNA upstream 47735 80312295 ~ 80312631 (-) True G445226
TU503828 lncRNA upstream 71190 80335750 ~ 80335953 (-) True G445230
TU503843 lncRNA upstream 123071 80387631 ~ 80388000 (-) True G445244
XM_036978510.1 mRNA downstream 3045 80240999 ~ 80244648 (-) True LOC118964655
XM_036978500.1 mRNA downstream 14332 80223240 ~ 80233361 (-) False LOC118964653
XM_036978501.1 mRNA downstream 14332 80223296 ~ 80233361 (-) False LOC118964653
XM_036978499.1 mRNA downstream 34209 80211184 ~ 80213484 (-) True LOC118964652
XM_036978498.1 mRNA downstream 36905 80208412 ~ 80210788 (-) True LOC118964651
XM_036978509.1 mRNA upstream 4047 80268607 ~ 80270301 (-) True LOC110514042
XM_036979064.1 mRNA upstream 17958 80282518 ~ 80308754 (-) False LOC118964724
XM_036978503.1 mRNA upstream 23527 80288087 ~ 80302018 (-) False LOC118936654
XR_005051870.1 mRNA upstream 24013 80288573 ~ 80290178 (-) True LOC118964656
XM_036978502.1 mRNA upstream 33880 80298440 ~ 80302018 (-) False LOC118936654
TU503806 other downstream 21492 80225475 ~ 80226201 (-) True LOC118964653
TU503794 other downstream 70613 80176762 ~ 80177080 (-) True G445197
TU503706 other downstream 259989 79982461 ~ 79987704 (-) False G445115
TU503246 other downstream 516157 79730987 ~ 79731536 (-) True G444691
TU502679 other downstream 1021825 79224003 ~ 79225868 (-) True LOC110524635
TU505560 other upstream 1678725 81943285 ~ 81943611 (-) True G446775
TU506105 other upstream 2126095 82390655 ~ 82391224 (-) True G447220
TU507016 other upstream 3052953 83317513 ~ 83319715 (-) False G447993
TU507017 other upstream 3054076 83318636 ~ 83319715 (-) True G447993
TU507137 other upstream 3245793 83510353 ~ 83520273 (-) True G448079

Expression Profile