RNA id: TU412668


Basic Information

Item Value
RNA id TU412668
length 207
lncRNA type intronic
GC content 0.49
exon number 1
gene id G363008
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8684175 ~ 8684381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACAGGTGAGACAGTAGTACATGTGAGGCAGTAGTACTGGTGAGGCAGTAGTACAGGTGAGGCAGTAGTACTGGTGAGGCATTAGTACAGGTAAGGCAGTAGTACTGGTGAGGCAGTAGTACAGGTGAGGCAGTAGTACTGGTGAGACAGTAGTAAAGGTGAGGCAGTAGTACAGGTGAGACAGTAGTACAGGTGAGGCAGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412666 lncRNA upstream 1477 8682461 ~ 8682698 (+) True G363006
TU412665 lncRNA upstream 1869 8682003 ~ 8682306 (+) True G363005
TU412664 lncRNA upstream 4598 8679285 ~ 8679577 (+) True G363004
TU412659 lncRNA upstream 11243 8672694 ~ 8672932 (+) True G362999
TU412658 lncRNA upstream 11618 8671985 ~ 8672557 (+) True G362998
TU412594 lncRNA downstream 15773 8700154 ~ 8701295 (+) True chsy3
TU412678 lncRNA downstream 18569 8702950 ~ 8703176 (+) True G363016
TU412687 lncRNA downstream 20227 8704608 ~ 8711371 (+) True G363019
TU412697 lncRNA downstream 40562 8724943 ~ 8725173 (+) True G363027
TU412712 lncRNA downstream 61780 8746161 ~ 8746385 (+) True G363042
XM_036976534.1 mRNA upstream 168540 8510633 ~ 8515635 (+) True minar2
XM_036976698.1 mRNA upstream 176545 8383645 ~ 8507630 (+) True LOC110524944
XM_021601561.2 mRNA upstream 377160 8290855 ~ 8307015 (+) False isoc1
XM_021601559.2 mRNA upstream 394918 8250159 ~ 8289257 (+) True slc27a6
XM_036976696.1 mRNA upstream 815610 7746330 ~ 7868565 (+) True mapkap1
XR_005051936.1 mRNA downstream 23358 8707739 ~ 8712041 (+) True LOC118964742
XM_021601567.2 mRNA downstream 85403 8769784 ~ 8772389 (+) True lyrm7
XM_036976700.1 mRNA downstream 90753 8775134 ~ 8848988 (+) False cdc42se2
XM_036976701.1 mRNA downstream 90753 8775134 ~ 8848988 (+) False cdc42se2
XM_036976704.1 mRNA downstream 196673 8881054 ~ 8900229 (+) False sptlc1
TU412257 other upstream 764610 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 991661 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1494356 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1494356 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2842906 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 90951 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 544457 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1164322 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2292301 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2741261 11425642 ~ 11428710 (+) True G366973

Expression Profile