RNA id: TU412725


Basic Information

Item Value
RNA id TU412725
length 410
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G363054
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8760831 ~ 8765642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTTGTGAAGTGCATTTATTTACCATTGATATATCATCACATTAGGTCTACGTGACAGACTGACAGTGAAATAAGTAGTTGGTCTACGTGACAGACTGACAGTGAAATAAGTTGCATCGGGACAGCATTGGACTATCTGGGGATAAAGAGATGACGGATGGTAGTCAGGCCGGTAGACGGTCTGCGTGGACAGTTAGCCGGGGGGCCAGCCCAACTGGCGTCCGCCCATCacgtggatgtggatgtggtagACGGACTGGCCACCGTCGGGCCCGTCGTTCAAGATCAGCCTGTAGCCCTTGGGCAGGCCGATCTGCTCGGCACACTTCTTGGCCACTATCATCATGTGGCCCAGGAGCTATGACATCACAAAGAAAGAAAAtgttactttattttttatttatttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412712 lncRNA upstream 14446 8746161 ~ 8746385 (+) True G363042
TU412697 lncRNA upstream 35658 8724943 ~ 8725173 (+) True G363027
TU412687 lncRNA upstream 49460 8704608 ~ 8711371 (+) True G363019
TU412678 lncRNA upstream 57655 8702950 ~ 8703176 (+) True G363016
TU412594 lncRNA upstream 59536 8700154 ~ 8701295 (+) True chsy3
TU412781 lncRNA downstream 72679 8833957 ~ 8834694 (+) True G363108
TU412731 lncRNA downstream 84933 8846211 ~ 8849107 (+) True cdc42se2
TU412842 lncRNA downstream 180716 8941994 ~ 8942544 (+) True G363165
TU412929 lncRNA downstream 332633 9093911 ~ 9094504 (+) True G363249
TU412903 lncRNA downstream 338989 9100267 ~ 9100945 (+) True G363223
XR_005051936.1 mRNA upstream 48790 8707739 ~ 8712041 (+) True LOC118964742
XM_036976699.1 mRNA upstream 59495 8517256 ~ 8701336 (+) False chsy3
XM_036976534.1 mRNA upstream 245196 8510633 ~ 8515635 (+) True minar2
XM_036976698.1 mRNA upstream 253201 8383645 ~ 8507630 (+) True LOC110524944
XM_021601561.2 mRNA upstream 453816 8290855 ~ 8307015 (+) False isoc1
XM_021601567.2 mRNA downstream 8506 8769784 ~ 8772389 (+) True lyrm7
XM_036976700.1 mRNA downstream 13856 8775134 ~ 8848988 (+) False cdc42se2
XM_036976701.1 mRNA downstream 13856 8775134 ~ 8848988 (+) False cdc42se2
XM_036976704.1 mRNA downstream 119776 8881054 ~ 8900229 (+) False sptlc1
XM_036976703.1 mRNA downstream 119785 8881063 ~ 8900229 (+) True sptlc1
TU412257 other upstream 841266 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1068317 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1571012 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1571012 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2919562 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 14054 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 467560 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1087425 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2215404 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2664364 11425642 ~ 11428710 (+) True G366973

Expression Profile