RNA id: TU428805


Basic Information

Item Value
RNA id TU428805
length 2750
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G377255
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21100331 ~ 21103100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacatacactatgcTGATACATTTCacttgaaggcattcagttgtacaactgactaggtatccccctttccctttcccttctgGACAATTACCGACACATGCTAGGAACCATTTAGCAAAGTTCCATTCACTATTAGCATTCTTTAGCACTGTTGTCACCTAAACACTTTATACACATTGAAtttcatataaatatataaaaatattccATAAACTGTAGATTTGATGTGATATTTAACATGTAAACATACATTAGATTCAGTTGGATAGTAGTTATTGTATTACAAGTGTGTTATGCAACACCTCTACTCTTAAACATTGTATAAATCACTGTAGTGTCTGGTAGACATACCCAGACACATGGATCACATGCCATTCTGAACCTTAAGTCTACTGTCCGAAGCTGTTGGAGCATAAATCGCAGCGTGTGGACTGTCTTCTCTTCGTTCAAAATATTCTCTGAGCTCCAGCACCTGCTCAAACCACTGGATGTTGTGTGTGTAACGTTTTTATCTGCTATACTTTGGCCCTACTGTAGATGTGTTTGTGAGGGCAGACTGACAGCGGTTCAAATACCACAGCCGATGCACCTGAAAGCAAGGCAGAAGTcgtttttgtgtgtttgtttgttttgatgATGTCTTCCAAGTGTTATTTATTCACCGTGTGCTGTGTGGTTTGTGGCAGCAACCTCTGTTGTACTAATGTAAAGACTCCTCTGAAGGCACAGTTGGCGAAGGAAGAGTTGTAATGTTATAGTAatacaatattattattattgaaaaaaaaaagtatttcacccccctttttctccttaatttcgtgatatccaattacgatcttgtctcatcgctgcaactccccaacgggcttggtagaggcgaaggtcgagtcatgcgttctccgaaacatgacccgccaaaccgcgcttctaaACAcgtttaacccggaagccagctgcaccagtgtgtcggaggaaacaccgttcaactaacgaccgaggtcagcctgcaggcgcccggcccgccacaaggagtcgctagagcgcgatgagccaaataaaccccccccggccaaaccctcctctaacccggacgatgctgggccaattgtgcactgctgTATAGGACTCCTGTTCACAGCTGGTTGTCACACAGCTTGGAatcaaacctgggtctgtagtgacgcctcaagcactgcaatgcagtgccttagaccactgtgccactcggtaGGCAGTAATACAATATTATAATACAATGTTAGTCTGACATCTGAGGGGTGGTGGTTGTCAGGTGTTCATTGGAGACACTATTCAGACCTGATCAtttacatattttatattttggaATTATAAGACTTCTCTGATCTACAATGGGAcagtcatcctctctctcccttgtcaGTCCCAGCTGGTTTTGTCAGCCACTGCTCTCTCAAGACAAGTGAATTCTGGACCCATGTGTTTGTCTGGGACAATCAATGTTTGTCTGAGAAATACTGAAATAGGTATTTGATTACCGGTACATATAGGTCATGAACCTGCTGCAGTACATTAAGTCTAGTCTGTCTCACCTCACCCCCcttcacCAAACCTCACCTCGCCcttcacctcacctcaccccccaACCCAATCCGTTTACTTTTTGTCACCGTTCAAACTCACATCCTCCTCCAAATCTTTCTAACTACCCCATAACCTTCTTCtcccgctctgtgtgtgtgtgtctgtgtgcacgcACGTGttcgtgcatgtgtgtctgttttcCCCTTTGTAGTAATGTGTGCTCCTGCTCGTGTCAGTTAACACATTCTTGTCTGCATTGCTGTTCAGGGAGTATGGTTGAGAAGTGTGAAACTATGTTTGTTTGTGCTCACGAGACTGATTGCCTGTGCTCGTgacagtgcatgtgtgtgtgtaacctgggCTGTTCCACCTGACTGTTCCTCCCTCAGAATTACTCTGCACCTGAAGATCTGCCCCCCCTCACCTGCCCACTCCCAGGTGAGCCTTACCCCCGGATCATCATCACGCCCTCCTGTTTCCCAGTTTGACATCCAGGTGGAGTCTGAATACCAGGAGTCTGACCTCTACCCAATGGGTCATGACCTTTACCCCAGCATTAACCCCTGCCCTCTGAATGGCCGCTACCTGACCTCTAAGACTCAACGAGACCAGTACCAATACAAAAACCCACACTCTCATCCCTATGATGTGGGCAGCGAAACCTTGCTGTAGGTTGacagcacatagacacacagacacatataaCCAGTTGCGAAATCTTCAAAACTATACAAGACAGTTTCTCTCCAGTTTATATTAATAAGAATGGCCTTTTAACCCGAGGTACCTATCAGTTATTATAAGAAGACAGACAAAGTATAACTTGTATATATTCAGTGCCCCTGCCCATTACAACAATTTATTACATCAACAAAAAAGAAACAACTAAAACTATATTAATTACTTGATTGCAAATGTATCTGTACAATTATAAAAAATGAAGAGAAAAATATAGAAATATAGAAACGTGAGCATTGTGATAATAATGGTTTAAAAAGgattgatgtgttgtttattgcaTTTATTAGGTATTTTGTTTTCAGTGCATTCACCTTTATGAATATATGTGTATAAATGACTGTTGGATAAAGTGAGATACTAATATCAGAGTGTACTTACTTTGGATTGTAAAGATTTACAAATGCATGTTAATAAAATAGTATTAAAAAACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU428824 lncRNA upstream 28749 21071374 ~ 21071582 (+) True G377272
TU428812 lncRNA upstream 56335 21043689 ~ 21043996 (+) True G377261
TU428798 lncRNA upstream 65815 21033942 ~ 21034516 (+) True G377251
TU428790 lncRNA upstream 75063 21024964 ~ 21025268 (+) True G377243
TU428788 lncRNA upstream 76962 21022705 ~ 21023369 (+) True G377241
TU428844 lncRNA downstream 9794 21112894 ~ 21125541 (+) True G377292
TU428847 lncRNA downstream 44231 21147331 ~ 21151990 (+) False G377293
TU428848 lncRNA downstream 44231 21147331 ~ 21150450 (+) True G377293
TU428849 lncRNA downstream 49314 21152414 ~ 21153105 (+) True G377294
TU428819 lncRNA downstream 56031 21159131 ~ 21160092 (+) False LOC110523400
XM_036977026.1 mRNA upstream 1042 21050936 ~ 21099289 (+) True LOC110522819
XM_021602064.2 mRNA upstream 108955 20952149 ~ 20991376 (+) False LOC110523398
XM_021602063.2 mRNA upstream 108990 20952149 ~ 20991341 (+) False LOC110523398
XM_021602062.2 mRNA upstream 117928 20952150 ~ 20982403 (+) False LOC110523398
XM_021602065.2 mRNA upstream 117930 20952166 ~ 20982401 (+) True LOC110523398
XM_021602067.2 mRNA downstream 5029 21108129 ~ 21160140 (+) False LOC110523400
XM_021602076.2 mRNA downstream 174468 21277568 ~ 21288531 (+) True npm2b
XM_021602081.2 mRNA downstream 370753 21473853 ~ 21477171 (+) True LOC110523406
XM_036977038.1 mRNA downstream 375585 21478685 ~ 21493435 (+) False LOC110523407
XM_036977039.1 mRNA downstream 375600 21478700 ~ 21493435 (+) True LOC110523407
TU428679 other upstream 263772 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 341830 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 503468 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 1116483 19983261 ~ 19983848 (+) True G376320
TU425343 other upstream 3016966 18067443 ~ 18083365 (+) True arhgef28a
TU428818 other downstream 5069 21108169 ~ 21158919 (+) False LOC110523400
TU430417 other downstream 1069435 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 1069435 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 1400652 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 1499010 22602110 ~ 22629669 (+) True G378868

Expression Profile