RNA id: TU490662


Basic Information

Item Value
RNA id TU490662
length 306
lncRNA type intronic
GC content 0.50
exon number 1
gene id G433284
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70237507 ~ 70237812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttgaggatcagcatggcagatgtgttgttacctacccttaccacctgggggcggcccatcaggaagtccaggatccagttgcagagggaggtgtttagtcccagggtccttagcttagtgatgagctttgagggcactatggtgttgaacgctgcactgtagtcaatgaatagcaatcTCACGTAGGTgttacttttgtccaggtgggaaagggcagtgtggagtgcaatagagattgcaacatctgtggatctgttggggcggtatgcaaattggagtgggtctaggatatctgggataatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490659 lncRNA upstream 2221 70235081 ~ 70235286 (+) True G433281
TU490656 lncRNA upstream 4865 70232406 ~ 70232642 (+) True G433278
TU490655 lncRNA upstream 5309 70231943 ~ 70232198 (+) True G433277
TU490653 lncRNA upstream 6619 70230689 ~ 70230888 (+) True G433275
TU490652 lncRNA upstream 7956 70229336 ~ 70229551 (+) True G433274
TU490663 lncRNA downstream 283 70238095 ~ 70238344 (+) True G433285
TU490671 lncRNA downstream 9009 70246821 ~ 70247064 (+) True G433293
TU490675 lncRNA downstream 11315 70249127 ~ 70249371 (+) True G433297
TU490676 lncRNA downstream 12196 70250008 ~ 70250261 (+) True G433298
TU490678 lncRNA downstream 13698 70251510 ~ 70251754 (+) True G433300
XM_036978255.1 mRNA upstream 329944 69871717 ~ 69907563 (+) False ect2
XM_036978253.1 mRNA upstream 329944 69871718 ~ 69907563 (+) False ect2
XM_036978254.1 mRNA upstream 329944 69871719 ~ 69907563 (+) False ect2
XM_036978251.1 mRNA upstream 329944 69871720 ~ 69907563 (+) True ect2
XM_021604102.2 mRNA upstream 368181 69776736 ~ 69869326 (+) True mcf2l2
XM_021604123.2 mRNA downstream 217653 70455465 ~ 70738345 (+) False LOC110524461
XM_021604126.2 mRNA downstream 501396 70739208 ~ 70836826 (+) False si:ch211-51h4.2
XM_036978257.1 mRNA downstream 501396 70739208 ~ 70836826 (+) True si:ch211-51h4.2
XM_021604132.2 mRNA downstream 744245 70982057 ~ 71012481 (+) False si:ch211-247n2.1
XM_021604133.2 mRNA downstream 745224 70983036 ~ 71012481 (+) True si:ch211-247n2.1
TU488020 other upstream 2023403 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 2133973 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 2773184 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 2773364 67460729 ~ 67464143 (+) False LOC110524407
TU486149 other upstream 3189343 66981949 ~ 67048164 (+) True G429156
TU492109 other downstream 721798 70959610 ~ 70959932 (+) True G434653
TU492265 other downstream 980977 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 1060803 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 1438059 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 2265648 72503460 ~ 72504435 (+) True G436403

Expression Profile