RNA id: TU490653


Basic Information

Item Value
RNA id TU490653
length 200
lncRNA type intronic
GC content 0.46
exon number 1
gene id G433275
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 70230689 ~ 70230888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTTGCtctctgtgattattattatttgaccctgctggtcatctatgaacgtttgaacatcttggccaatgttctgttataatctggcatagccagaagaggactcgccacccctcatagcctggttcctctaggtttcttcctaggttctggcctttctagggagtttttcctagccaccatgcttctacacctgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490652 lncRNA upstream 1138 70229336 ~ 70229551 (+) True G433274
TU490648 lncRNA upstream 4648 70225779 ~ 70226041 (+) True G433270
TU490647 lncRNA upstream 6306 70224169 ~ 70224383 (+) True G433269
TU490637 lncRNA upstream 18146 70212232 ~ 70212543 (+) True G433259
TU490622 lncRNA upstream 34366 70196047 ~ 70196323 (+) True G433244
TU490655 lncRNA downstream 1055 70231943 ~ 70232198 (+) True G433277
TU490656 lncRNA downstream 1518 70232406 ~ 70232642 (+) True G433278
TU490659 lncRNA downstream 4193 70235081 ~ 70235286 (+) True G433281
TU490662 lncRNA downstream 6619 70237507 ~ 70237812 (+) True G433284
TU490663 lncRNA downstream 7207 70238095 ~ 70238344 (+) True G433285
XM_036978255.1 mRNA upstream 323126 69871717 ~ 69907563 (+) False ect2
XM_036978253.1 mRNA upstream 323126 69871718 ~ 69907563 (+) False ect2
XM_036978254.1 mRNA upstream 323126 69871719 ~ 69907563 (+) False ect2
XM_036978251.1 mRNA upstream 323126 69871720 ~ 69907563 (+) True ect2
XM_021604102.2 mRNA upstream 361363 69776736 ~ 69869326 (+) True mcf2l2
XM_021604123.2 mRNA downstream 224577 70455465 ~ 70738345 (+) False LOC110524461
XM_021604126.2 mRNA downstream 508320 70739208 ~ 70836826 (+) False si:ch211-51h4.2
XM_036978257.1 mRNA downstream 508320 70739208 ~ 70836826 (+) True si:ch211-51h4.2
XM_021604132.2 mRNA downstream 751169 70982057 ~ 71012481 (+) False si:ch211-247n2.1
XM_021604133.2 mRNA downstream 752148 70983036 ~ 71012481 (+) True si:ch211-247n2.1
TU488020 other upstream 2016585 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 2127155 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 2766366 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 2766546 67460729 ~ 67464143 (+) False LOC110524407
TU486149 other upstream 3182525 66981949 ~ 67048164 (+) True G429156
TU492109 other downstream 728722 70959610 ~ 70959932 (+) True G434653
TU492265 other downstream 987901 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 1067727 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 1444983 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 2272572 72503460 ~ 72504435 (+) True G436403

Expression Profile