RNA id: TCONS_00033342


Basic Information

Item Value
RNA id TCONS_00033342
length 1381
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id XLOC_016051
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 552481 ~ 614856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTCCCCGTTCATCTCACCTGCTACTCTACTGAACTCTCTCACACGTCaggtgtgtgtctgcgtgtcgaTGAACATTGAGCTCCAGTCACACTACACTGAAATGACGACAGAGGTTTGATCAAGTGAGGGTCATCTGGTGTATTCCTCACGCAGCAGAGCGATATGAATTCAGTGCATTTCAGCATCCTCCATTCATTAACCTGCCGGATCTGCTGTGAATCTCTCAGTCTGTGAACTCGAATAATGATTAGCAGGCTGAAGGTCTCTTTAAGGAGTGGGATCAGCGTCCTGTCGTGGTCTGGATGAGCTGGACAGCTGTTTGGGCCTCAGCGGAGGATTATCCCGCTGTCCTGCATTCCTCACCGCGGCACCAGATGAAATATTCCTCAGCAGATCAAGGCCACGGTCAGACAGTGAAAAACCTCCAGTCAGATCTGCTGTCATTGCGGTAATCCAGCGTGGACTGAAGTCTCTCAGTCTTCAGGAGTGTAAGAGCAGTACGCTGGCATGACCTCAATTAACTCCGCTGGATAAAGGGAACTAGCTGGATGTCAGTAAAATGAGAGGAAGAGGAATATAGTGTTCGCGGAGGGCGCCGCGCAGCTGAACTCATGAAACGCTATGCTCAGACTGCAGATGAGCATGCAGGACACGCACACATCAATCactcagtgtgtgtctgtgtgtcatggtcaggactgtgtgtgtgtgtgtaaccagaGAGTCGTGCCAGACGCAAACAGAGTGACCCGCAGGACAACACGGAGACGCCAGCGCAACCTGATGCCTCTTTTAAAGTCCCGATGAAAAGAggaaattattatcatttttttttcttcctggttttattgTTGAGCAAAAATACCACTgcagattgtttatgtttgccGTGAGGTATTATTTCACActggatagtgaaagtgtcatggATGGATGACCTCaaactctgtgtttgtgtgtgtgtgtgtccattttAGCGCCTCATGATTGTCAAAAAGACAAACGTGCACATGTAGAAAGTCCTGCCCTCTGCTGTAGCGCCGGCATCTCAGTCAGTGATTTGCTATTCAAACATAACAGCTGTAGGTGTGTTTGGGTCGCAGGTTTGACGTCAACAAAAGTCATCATCACTGATTCCCACGTCATTGCAAAACTCTCTTTATCTAACATTTGATGGCGATTGATAAGCATGAGGTGCGTGAGGTTTTGTCATTGAGCTGCTGTTTTGATCTCTGAATAATTGATCTTCcagcagttggcgtttctgtgtggagtttgcatgttctctccgtgttggcatgggtttcttctgggtgcttcggtttagtccaaacacatgcgttatagggGAATTAATCAACTAAATTGTCAGTGTagt

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:1904029 regulation of cyclin-dependent protein kinase activity biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033341 lncRNA downstream 20037 495311 ~ 532444 (-) True XLOC_016050
TCONS_00033340 lncRNA downstream 57041 492923 ~ 495440 (-) False XLOC_016050
TCONS_00033754 lncRNA downstream 93570 405886 ~ 458911 (-) True XLOC_016049
TCONS_00033753 lncRNA downstream 93574 405886 ~ 458907 (-) False XLOC_016049
TCONS_00033752 lncRNA downstream 93592 405330 ~ 458889 (-) False XLOC_016049
TCONS_00033756 lncRNA upstream 113804 728660 ~ 730230 (-) True XLOC_016057
TCONS_00031734 lncRNA upstream 269250 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033757 lncRNA upstream 316212 931068 ~ 1195912 (-) True XLOC_016061
TCONS_00033758 lncRNA upstream 503896 1118752 ~ 1121302 (-) True XLOC_016063
TCONS_00033344 lncRNA upstream 700310 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00031724 mRNA downstream 162614 374365 ~ 389867 (-) True XLOC_016048
TCONS_00031723 mRNA downstream 187642 354424 ~ 364839 (-) True XLOC_016047
TCONS_00031718 mRNA downstream 258688 283764 ~ 293793 (-) False XLOC_016044
TCONS_00031719 mRNA downstream 259445 284183 ~ 293036 (-) True XLOC_016044
TCONS_00031717 mRNA downstream 346325 198565 ~ 206156 (-) True XLOC_016040
TCONS_00031726 mRNA upstream 72017 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031727 mRNA upstream 81388 696244 ~ 707152 (-) True XLOC_016054
TCONS_00031728 mRNA upstream 98224 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031729 mRNA upstream 105925 720781 ~ 722170 (-) True XLOC_016056
TCONS_00031730 mRNA upstream 116635 731491 ~ 732864 (-) True XLOC_016058
TCONS_00031733 other upstream 267480 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 335392 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 1686502 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2511102 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 2772716 3387572 ~ 3403034 (-) False XLOC_016091

Expression Profile

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