RNA id: TCONS_00031729


Basic Information

Item Value
RNA id TCONS_00031729
length 1390
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_016056
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 720781 ~ 722170 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCTCGGGATGTCAATGCACTCATCATCTGCAACAGGTAGCTACACCGCCCTGTCACTCTTCGAACTTTCTGAAGCTCTGCCAATGAAACTGGAGGTTTTCTGCGGGAGTCACTACGACTCCAAGCCTGCGGAGTTGTGCAGCGATGCTGAGGGGAGCATCCCATCGCCGGTGTCCGCAGAGGAGGAGCTGGGCTCGGATGGAGACTGCGTGGCGCACAGTCCGGCACCTGTCGCCGACACCAAAGGCAAACCCTACACTCGGAGACCCAAACCTCCATACTCTTACATCGCACTTATCGCCATGGCCATCCGAGACTCCAACTCCGGCCGACTCACTCTAGCCGAAATCAACGACTACCTCATGAAGAAGTTCCCGTTTTTTAGAGGCAGCTACACCGGCTGGAGGAACTCAGTGCGCCATAATCTGTCTCTAAACGACTGCTTTCTTAAGGTCTTAAGGGATCCTTCGAGACCGTGGGGAAAGGACAATTACTGGATGCTGAACCCGCACAGCGAGTACACCTTCGCGGACGGAGTGTTTCGCAGAAGGAGAAAGCGCATTAGTAAAAAAACCGGCAGGGAGCCAGAGGGGCCGGTGCAAACCCACGCATTGGACAGCAATGACTCCATCGCTACGCCTCCTTCGAGCGGAAAGTTCACCAGTTCTTTCGCCATTGAGAGCATCCTCAGTCGACCCTTCAGAAGGGAGGACCGCCCCGTGCTCAGCCCTGACACCTGGCCGGGGGGAGTGGACACTGTGCTGCCGTATGTCATGCTTCGATCCTATGGTGCCCTGGAGGACCCTTCCATGAGCCGCCGACAGCGCGACTTTTTCGCATTCCAGCTGCCGCCTGAGTGCCTCTCAATCCCGCATACGAGCGCGGCGGTGCCCGCGCCTGCAACCGCGGGATATCACCCGTTCAAAATTGACTATTTGTTGTCGTAACATTGGGTACTTTGTGATGGGGAACTTCGGCACTTTCTACAGCACTCGTGACTTGAAAGAGACATTGTGCAAGATACATTTCATTCGACTGCATTTTTAAGAATCGTTCTGAACCTTTAATATGCACCACGAAAACAAGTGAACTCAAAGTTGTGAACTATTTAAGTCTATTCTATTTTGTACTGTCCTACTGAATGATTAAGTCGTTTCCGTgtatttatttgtcatattttgtgtttgttctgtgttAAACCAGCGGTGCCTCAAACGATGATGCCTTCATTTCAGATTTAATACTCAAGATGAACTATATGAGAGGCGAGCTCAGTTTGTGAGGCTCCTGCATCAAACTTGTAAACTGGAATTGTTTAAGCAATTGTTTTTCTGACAAAATGCACGCGCATTTTATATTGAACaataaaattgtttgtttttttaaatg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-74 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to xenobiotic stimulus. Predicted to be located in nucleus. Is expressed in gut; head; inter-frontal joint; and mesenchymal cell. Orthologous to human FOXQ1 (forkhead box Q1).

Ensembl:

ensembl_id ENSDART00000169498

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033343 lncRNA downstream 105925 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033342 lncRNA downstream 105925 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033755 lncRNA downstream 105977 565097 ~ 614804 (-) True XLOC_016051
TCONS_00033341 lncRNA downstream 188337 495311 ~ 532444 (-) True XLOC_016050
TCONS_00033340 lncRNA downstream 225341 492923 ~ 495440 (-) False XLOC_016050
TCONS_00033756 lncRNA upstream 6490 728660 ~ 730230 (-) True XLOC_016057
TCONS_00031734 lncRNA upstream 161936 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033757 lncRNA upstream 208898 931068 ~ 1195912 (-) True XLOC_016061
TCONS_00033758 lncRNA upstream 396582 1118752 ~ 1121302 (-) True XLOC_016063
TCONS_00033344 lncRNA upstream 592996 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00031728 mRNA downstream 4355 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031727 mRNA downstream 13629 696244 ~ 707152 (-) True XLOC_016054
TCONS_00031726 mRNA downstream 31734 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031724 mRNA downstream 330914 374365 ~ 389867 (-) True XLOC_016048
TCONS_00031723 mRNA downstream 355942 354424 ~ 364839 (-) True XLOC_016047
TCONS_00031730 mRNA upstream 9321 731491 ~ 732864 (-) True XLOC_016058
TCONS_00031731 mRNA upstream 132274 854444 ~ 879800 (-) True XLOC_016059
TCONS_00031732 mRNA upstream 159784 881954 ~ 898899 (-) False XLOC_016060
TCONS_00031735 mRNA upstream 222171 944341 ~ 985417 (-) False XLOC_016062
TCONS_00031737 mRNA upstream 452608 1174778 ~ 1188707 (-) True XLOC_016064
TCONS_00031725 other downstream 137214 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031733 other upstream 160166 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 228078 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 1579188 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2403788 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 2665402 3387572 ~ 3403034 (-) False XLOC_016091

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU39139 True 112 TUCP 0.41 1 CI01000004 14723108 ~ 14723219 (-)
grasscarp (Ctenopharyngodon idella) CI01000098_01220800_01221705.mRNA True 2001 mRNA 0.47 1 CI01000098 1220166 ~ 1222166 (+)
mexican tetra (Astyanax mexicanus) TU39139 True 1424 TUCP 0.44 1 NC_035899.1 58417394 ~ 58418817 (+)