RNA id: XM_036979416.1


Basic Information

Item Value
RNA id XM_036979416.1
length 3182
RNA type mRNA
GC content 0.51
exon number 17
gene id rasef
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12103255 ~ 12139444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGAAGTAAGCCGCGTCAGCAGCTGTCGCACCCCACCTGTGTACCTGGCAAGAGACCCGCGGCAAGGGGACTGTCACAGCACCGCAGAGGACGACACAAGACTTGATAAATGATACTAGGGCAAAGGACGACACATTAATACCGTTAGCCCAAGGTGGTCGAAGTCCTGGAGAGAATGAAcgctctatttttgttttattttctggATCTCGATAAGGTGATTGACAGTGTTGAACGACTTGGACAAAAACCTCAGACTTGAAGTTCGTAAAGTGGTGGTAAAAGGAATTATTTGGTTATAAACTTTGCTTTATTGCTGTTGCCCATAGTGTTCTTTCCCCTGGTGGTTTTCTGCGTACTTGGTTTCTGGGGCTTTCAACCCTGGACTGAACCATGTCATTACCAGGCATGGGTAGGGACCGGGAGAGTTTGTGTTCGCTCTTTCACGCTTGTGATGTGGATAATTCTGGACAGATTGAAAAATACGAGTTTATTCAAATCTGCTCAGAGCTCAATGTTCCACCGACGGAGAGAGAGCACATATTCTCTAAACTGGACACCGACAGAGACGGGACTATCAATCTAGCGGAGTTCATTAGCGGCTTCCTCGGGATCTCGGAGCAAGTGTATTGTGGGAACATGGAGAGCGAGAGCTGGGAAGTCTCTTCTCCGGCCTGGGAAGATTTCCAGACCCGAATGGGGGACCATGCCAAGTTCATACCCAGGAATGAGCAGGCAGCCACGCTGTATCAGAACATCAGTATGGCAGAGCCCAGGATGGTGCCTCAGTATGAGAGACTCATCATGAGTTTCACCAGAGAGATCAAACAGCACAACGCTGAGATGGAGAACCTGGCCCTGGCTGTcaaacgGGCACAGGACAAGGCCTCCATGCAACTcagtgagatggaggaggagatggatcaACGCATCCATACAGCCGAGAACAACACAAGGCttcagGAAGCCAAGAGGGCTGAGGCAGCTCTTAGTGAGCTGAAGAGGCACTATGAGTCCGAGGTGTGTGAGCTGCAGCACAAGGTCCAGAAGATGAAGCTGATTGAAGACCAGTACAAGAACATCAACATGAAAGATGAGTCTTCAaccctgaagaggaagatcaacAAACTGACTCTAgaaaaCCAGAGGTTGAAGCAGGAGTTGATGCAGTCCCACACTAACATAGCCTTCCTGCAGAGTGAGCTGGACTCTCTGAAGAGTGACCTGACAGACCACAGCATCAACTCGGAGGGATACGAGGCGATGATGAGAGAGTTCTCTGATGAGAGGGATAACCTGGAGCGACAGATAGAGATCCTACAGGCAGCCAACAGGAAGCTTAATGACAGTAATGATGGGCTGCTCAGTTCCCTTGAGAACAGCCTCAGCAAGAGCAACAAGCGTGATAGCAGTGCTTCCCCAGCCAGCATCATTagcaggaggagcaggagcaACTGTTACTCATCCCCATACTTGGACAGGTTCTACCAGGCGGGTGTGGAGGATGTTGATGAGGACGAGGACCCACTGGGAGGCCTGTTTGGGGGTGGTGGTAGGGGCTCCCTGGGGTGTCGGAGGCCTGGTCTGGACACCATAGCTCTGGCTCTGTGCGACCCAGGCATGCAGCGCAGACATAGCTACGAGGTGGATAGCCTGCCCGAGAGCTGCCTAGACAGCGGCATGTCCACGCTGCGCGGCTCCAACTACGGATATGACTCTGAGCAGGAGGTCAAAGGGcacgaggatgaggaggagggacagagggtggCCAGGATCACAGATGGCCTGGCGGAAGACAACTTTGACAACGACATTGCAGAGGTGCGGAACAAGATGGTGTTCGGATCAGACAATGGTTCTGTCCTGGACTGGAAACCCTTGGAACCAGTCAGCCGGAACAGCTCGGGAGCGTCCACACGCAAAGCCCTGTCCGCCATCACCAATGAGgcAAAGGAGAAGGAGTCAGCTGACCTGGGATATATGACATCAGAGAAGGCCTACCGGGTGGTGTTGGCAGGTGACGCGGCGGTGGGCAAGTCCAGCTTCCTGCTCCGCCTCTGCAAGAACGAGTTTCGAGGAAACACCAGCGCCACCCTGGggGTGGACTTTCAGATGAAGAGTCTGGTAGTGGATGGAGAGCCTACCCTACTACAGCTATGGGACACAGCAGGccaggagagGTTCCGCAGCATTGCTAAGTCCTACTTCAGACGAGCCGATGGCGTCCTCCTGCTGTATGATGTCACCTGTGAAAAGAGCTTCCTCAACGTCCGAGAGTGGGTGGACATGATCGAGGACGTGTCCCAGGACGACATCCCCATCATGCTGGTGGGGAATAAGAGTGACCTGAGAGAGCAGGCTCTGCAGGACGGGATCACCTGTGTCACCACCAGCTACGGAGAGAAACTGGCCATGACGTATAACGCCCTCTTCTGTGAGACCAGTGCCAAAGACGGCTCCAATGTCATAGAGGCCGTGCTGCATCTGGCCAGagaggtgaCCAAGCAGGTTCATGGGGCTGAGGACCAGGAGTCTGTGACTAACCTCTATAGAAGTCCCAACAAGAAGATGCCCACCGTCACCTGCTGCACAGGATAAGATACCAAACAGAAACGCTACTAGAGTAACCAAAACTCACCACCTAAGGAACCACATCAACAGAACACCACAACACTAGAACACTGTGTCCAACAGCAGAACAAGAGAACAATGGGACTTCAGAAGAAAAGAACACAGGAGAATCTGATCAGAACACTAGAGTACGTACAGTAACATTAGAACCACAAGACAGCTGGTTTTCTCATATAACATCAACTGTACTGCTTAATGCTATAGGATAACTCATATTGAGCTGTTAAGAAAGACAGctaatgcctgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtctgtttgtgttatTATGCGCTTGCATGAATGCATGGGTGCTTGTGTTATATGCAGACGTCATTCACATCCTGGTTAGTAGTGAAATCTAATCTCCTATGCTGTTGATTGTGTCTTATGAAACCTCTGTGTGTACCCAATAGTCATACAttggaagtcagaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaattccttgttaacaaactgtagttttggcaagtaggttaggacatctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539619 lncRNA downstream 6423 12096484 ~ 12096832 (-) True G474641
TU539605 lncRNA downstream 44776 12058042 ~ 12058479 (-) True G474627
TU539587 lncRNA downstream 83305 12019722 ~ 12019950 (-) True G474609
TU539578 lncRNA downstream 93149 12008802 ~ 12010106 (-) True G474605
TU539506 lncRNA downstream 153867 11949051 ~ 11949388 (-) True G474535
TU539648 lncRNA upstream 142200 12281639 ~ 12282596 (-) True G474664
TU539713 lncRNA upstream 145656 12285095 ~ 12285402 (-) True G474722
TU539719 lncRNA upstream 165824 12305263 ~ 12305530 (-) True G474728
TU539722 lncRNA upstream 167714 12307153 ~ 12307428 (-) True G474731
TU539788 lncRNA upstream 254014 12393453 ~ 12394430 (-) False G474793
XM_036979414.1 mRNA downstream 39968 12040527 ~ 12063287 (-) True LOC110525269
XM_021605252.2 mRNA downstream 123858 11955217 ~ 11979397 (-) False LOC110525267
XM_021605259.2 mRNA downstream 123859 11955217 ~ 11979396 (-) False LOC110525267
XM_021605253.2 mRNA downstream 123860 11955217 ~ 11979395 (-) False LOC110525267
XM_021605255.2 mRNA downstream 123860 11955217 ~ 11979395 (-) False LOC110525267
XM_036979415.1 mRNA upstream 179 12139618 ~ 12157601 (-) False LOC110525271
XR_005052018.1 mRNA upstream 179 12139618 ~ 12157601 (-) False LOC110525271
XR_005052019.1 mRNA upstream 179 12139618 ~ 12157601 (-) True LOC110525271
XM_036979418.1 mRNA upstream 25128 12164567 ~ 12244072 (-) True frmd3
XM_021605269.2 mRNA upstream 111042 12250481 ~ 12257862 (-) False LOC110525275
TU539592 other downstream 73645 12029159 ~ 12029610 (-) True G474614
TU539498 other downstream 146718 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 360497 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 501258 11601515 ~ 11601997 (-) True G473930
TU538397 other downstream 718809 11379527 ~ 11384446 (-) True LOC110525252
TU539726 other upstream 285022 12424461 ~ 12425235 (-) True LOC110525279
TU540491 other upstream 812813 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 889946 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 1057876 13197315 ~ 13198012 (-) True G475573
TU541500 other upstream 1891976 14031415 ~ 14087681 (-) False fam172a

Expression Profile