RNA id: TU539578


Basic Information

Item Value
RNA id TU539578
length 1305
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G474605
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12008802 ~ 12010106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCCCCCACaaattcagaagggttgggttaatAGCTGAAGTCATGTTTCGGGTTGGACCTTGTTCGCAATGAACTTCTTTTTTTTAACGTATGCATGTACATACGAGACAACCGAAGGAAATATGGAACAGAGAAGGAAGGAATAGCATAGGCAAGTTTTTATAGTGgccaaaagtagggcactataggGACCCATTTGAGATGCAACCATAGGTGCTGCCTGGATCTTTTGCAGATATGGACTTAGGAACTACTTCAACAGTGTCTGACTAGGCATGCTCTCCAGCTACCTAATAGGAGATATTTAAGTTCTCACTTCCAGGTGACTGACTATATGCTCATGTACAAAACGCAAATGAAGGGAGAATTGTACCTTTTCTCCATCTCACTCTTAATATTTCTCTCAGGCAGCAGAGGATATAAAATCAGTCTAGacatcagggcctgtattcatagaGTGTAGGAGGGCCAATCAgggtcagtttagccttttagatgaTTTGGGCAGAGGAAACAGGCGCTTTCTGAATACGAGCCCTGATCTTGAGCGTTGAAGACACTTTGTATCATTGGGTATTTTCACACAAAGATGAGCAAGTGTTAGTGATTATGAATGCATTGTTATCCTGAGTTAGGAGGCTATATGTTGCCATGAAACAGTTAACAGCCATGACACATTCATGTTGCAGATGTTTGGAGGACAACTTCAGCATTGATTCATGATAGGCCTCCAAACAAACAAAatgacacacacagaaatgcTTGCAGTCATTGTTTTGACCAAATAAACATTTAGGGCAACAGTCTTACAATGGGAAAATGTGCATTTCCATTGCACCAACCCTTGCCCAATACACTTGAAATGTGAGAGGAGCACATGCTATCTTGGACAAACGGAGTCGATGCAGTCAGCTCATCGATTTAGAAGAAAATCAAAACAATTAGGAAATAAACGTTATTCGCCTCATGTGCAAGCAAGGCTAAGACTTTATCCATGGAAGGTTCAAATGTATACATTTGAGAATGTTTAAATAGGAAAACATAAATACAACTATCAAATAGTCAAGTACTATATTAGAGAACCTGCATTGCCTCTTTTGATCAGTTTTGTTTGGTGTACTATGCTCTGTACTCATTACCACAGGAAGAAACGGGGAGGGTCCACGTTAGCCGTGAATAATACTTTACATACAtaaatatacatattatataacatgtaaatgtaTGCATATGAATGTAAATACAACATATGTACAAATTATGCACATgccctaaatgactattgcactGTTGACTGTTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539506 lncRNA downstream 59414 11949051 ~ 11949388 (-) True G474535
TU539556 lncRNA downstream 72255 11936283 ~ 11936547 (-) True G474583
TU539550 lncRNA downstream 80367 11928221 ~ 11928435 (-) True G474577
TU539549 lncRNA downstream 81179 11927384 ~ 11927623 (-) True G474576
TU539543 lncRNA downstream 92055 11916517 ~ 11916747 (-) True G474571
TU539587 lncRNA upstream 9616 12019722 ~ 12019950 (-) True G474609
TU539605 lncRNA upstream 47936 12058042 ~ 12058479 (-) True G474627
TU539619 lncRNA upstream 86378 12096484 ~ 12096832 (-) True G474641
TU539628 lncRNA upstream 112516 12122622 ~ 12123474 (-) True G474646
TU539631 lncRNA upstream 122248 12132354 ~ 12132629 (-) True G474649
XM_021605252.2 mRNA downstream 29405 11955217 ~ 11979397 (-) False LOC110525267
XM_021605259.2 mRNA downstream 29406 11955217 ~ 11979396 (-) False LOC110525267
XM_021605253.2 mRNA downstream 29407 11955217 ~ 11979395 (-) False LOC110525267
XM_021605255.2 mRNA downstream 29407 11955217 ~ 11979395 (-) False LOC110525267
XM_021605254.2 mRNA downstream 29408 11955217 ~ 11979394 (-) False LOC110525267
XM_036979414.1 mRNA upstream 30421 12040527 ~ 12063287 (-) True LOC110525269
XM_036979416.1 mRNA upstream 93149 12103255 ~ 12139439 (-) False rasef
XM_036979417.1 mRNA upstream 95706 12105812 ~ 12139444 (-) True rasef
XM_036979415.1 mRNA upstream 129512 12139618 ~ 12157601 (-) False LOC110525271
XR_005052018.1 mRNA upstream 129512 12139618 ~ 12157601 (-) False LOC110525271
TU539498 other downstream 52265 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 266044 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 406805 11601515 ~ 11601997 (-) True G473930
TU538397 other downstream 624356 11379527 ~ 11384446 (-) True LOC110525252
TU537285 other downstream 1528956 10476409 ~ 10479846 (-) True G472576
TU539592 other upstream 19053 12029159 ~ 12029610 (-) True G474614
TU539726 other upstream 414355 12424461 ~ 12425235 (-) True LOC110525279
TU540491 other upstream 942146 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 1019279 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 1187209 13197315 ~ 13198012 (-) True G475573

Expression Profile