RNA id: XM_036979414.1


Basic Information

Item Value
RNA id XM_036979414.1
length 3620
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC110525269
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12040527 ~ 12063287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAAACCGCGTGAGAAAGTTGCCATTGGGGTAAAGCGAGGCTTGACGCTACATTGTTGCGCTGATAGTGGGAGTTATTATCAAAACTAACAACATTTTCCCCTTACGAAACCTTTCTTTAGACTGGAAAATACTTAAATCTTACGTTTCATCGAGTACAGGCTATTATTCGGATAACGAATAGTAATTTATGTTGAGCATTCACCACAAGCTACCACGGCAAGTCAAGTTACAATTAACTTATGTGGATTTGTTCTAGTAGCCTACGCTTCTTCCCTGAGCGCGTTGTGGTCTTGGCTCCGTTGACTACAACTGGAGTTTCGGCTATTCGGATATTTCTGCGTGGACAGGATCACACAGCCTACAACAGAGGAAGACCACTCTTGTTTTTTTCCTCTGGATGACCGTATCCCTTGTTTTTACGGTTGATACATGGTCGTATGCTGGAGTAAAGAAATAGTATTCTTCCGCGCATCAGTCGCCGGGTCACCGCTGTTGAGGAGTTGACTGGAGATCTAGGAGGACAAACGGTCGGACGTTCTGTGTCATTTTACGGCCAGTCTCGGAAGGACCTAGGATGCATTTATCGTAAGGTGGAGCATCCCCACACCGGTCCCTATTTTGATACCAGACGTTTTTTTAGGAAGAGGACGTCTGCGGAGGTAGAACGATGTTCCCCCAGGGTCGACACCCGacGCCCCACCAGGCCCCGGGCCAACCTTTCAAATTCACCATTCCAGAGTCACTGGACCGCATCAAAGAGGAGTTCCAGTTCCTCCAAGCCCAGTACCACAGTTTGAAACTGGAGTGTGAGAAGCTGGCCAGTGAGAAGACAGAGATGCAGAGGCACTATGTTATGTACTATGAAATGTCTTATGGGCTGAACATTGAAATGCATAAACAGACAGAGATTGCCAAGAGGCTCAACACCATCTGTGCACAAGTCATCCCCTTCCTCTCACAggagCACCAGCAGCAGGTGGTCCAGGCGGTAGAGAGAGCCAAGCAGGTCACCATGGCTGAACTCAACGCCATCATTGGGGTACGGGGACTTCCCGGCCTACCATCCACTCAGCAGCACCTGTCCCACGCGCACAGCTCCCATGTCCCCCTCACACCCCATCCCGCGGGGCTCCACCCGGCCCATTTGGGGGGAGGAGCCAGTCTTCTCGCCCTGTCCAGTGCCCTGGTGGTGCCGCCACCCCACCTGGCCAGCAAAGAGGACAGGAAACACCCAGTGGAGACCGAGCACCTGAGAGagagagagccaggcacAAGTAATACCCTGCTGGTTGCTGACAGTTTGCGTAACTCAGACAAGCGGCGCAACTGACCAGATTTTGCCAACGACACCAAGAAGAGAAAAGTGGAGGACAAGGACTCCAGTCATTATGATAGTGATGGAGAGAAGAGTGATGACAACCTGGTGGTGGATGTCTCCAATGAGGACCCTGCCTCCCCACATGGTACGCGCCTACCATCCCCCAGGGAGAACGGGCTGGACAAGACACGTCTCCTGAAGAAGGACCCCTCCTGTAGCCCTGCCTCCACAGCCTCATCTGCAAGCTCCTCCTCCCTCAAGTCCAAAGAGATGGGAATGCGTGATAAGCCGGGTACGCCTGGGCTGAAGTCGAGCACACCTACTCCCAGAGGAGACTCCACCCCCGGGCCCAGCGCCACTCCCAGTCTCCGGCCAAGCCTTGTCAAGCCCCCCTCCATGGAGCTACCTCACCCACCTACTGCTGGTCTGCGGACCCCGCTGGCGGTGCCTGGGTCGTACCCCGGGCCTTTCGGAATGCTGCCCCACGCCACCATGAACGGGGAGCTGGCGGGCGCCGCCTACGCCGGCCTCCACAACATGTCCCCTCAGATGAGTGCTGCGGCTGCTGCCGCCGTGGCCGCATACGGACGCTCCCCTATGGTGGGCTTTGACCCTCATCCTCACATGAGAGTGCCTGGAATGCCCCCCAGCTTATCAGGCATCCCTGGAGGCAaaccGGCCTACTCTTTCCACGTTAGCGCCGATGGACAGATGCAGCCGGTGCCCTTCCCTCCGGACGCCCTAGTGGGCCCGGGCATCCCACGCCATGCTCGCCAGATCAACACTCTGAGCCACGGCGAGGTGGTGTGTGCCGTCACCATCAGTAATCCCACGCGCCACGTCTACACGGGCGGCAAAGGCTGCGTCAAGGTCTGGGACATCAGTCACCCTGGCAACAAGAGTCCCGTGTCCCAACTGGACTGCCTGaaccgAGACAACTACATCCGCTCGTGCCGGCTGCTCCCCGACGGCCGGACGCTCATCGTGGGGGGCGAGGCTAGCACGCTGTCAATCTGGGACCTGGCCACGCCCACCCCACGCATCAAGGCGGAGCTGACCTCCTCTGCCCCCGCCTGCTACGCGCTGGCCATCTCCCCCGACTCCAAGgtttgcttctcctgctgcagcGACGGGAACATCGCTGTCTGGGACCTGCACAACCAGACCCTGGTTAGGCAGTTTCAGGGTCACACAGACGGAGCCAGCTGTATTGACATCTCCAATGATGGGACCAAGCTGTGGACAGGGGGGCTGGACAACACCGTCCGATCCTGGGACCTGAGGGAGGGACGCCAGCTGCAGCAGCACGACTTCACCTCacagatCTTCTCTCTGGGGTACTGTCCGACGGGAGAGTGGCTGGCGGTGGGGATGGAGAGCAGTAATGTAGAGGTGCTCCATGTCACCAAGCCAGACAAGTACCAGCTGCACCTCCACGAGAGCTGTGTGCTCTCACTCCAGTTTGCCTCATGTGGTAAATGGTTTGTGAGCACAGGGAAGGATAACCTGCTGAATGCGTGGAGGACACCGTACGGAGCCAGTATattccagtCGAAGGAGTCTTCGTCGGTGCTAAGCTGTGACATCTCAGTCGATGATAAGTACATAGTTACAGGTTCTGGAGATAAGAAGGCCACTGTCTATGAAGTCATCTACTAGACTGCACTAGTGAGTGGATCGGCCACTGACAAACCAAAGTGGCTTTTTACTGTCCTACATCTGACCCTGGGTCAGGGAATCCTAAAGAACATTCTATATGATCGTGACCTTTCTACTGTCCTACAGCTGACCCTGGGTCAGGATATCCTACAGGACATTCTATATTCATTACCATGGGCAGAGCCCCCAGAACAATGACTGATGGAAATGCGGACCGAAACCTCAAATATGCCGAATTAACAGCATTGACGTTTTTATTTTGACAGACGAAGAATGTGAATGGCCTGGTGACCTCTACCCTTTGTGACCCCTAAACTCTGACCCTAGCCTGCTTTTCTGCCAGACATGAGCCCCCACACTGACTCTTCACCCTAGTATCGTGTCCCATCCTACATGTCTGCTATCGTGTGATTAGTTCAGTTTAATTCTCTTTGTATTTTTATCGGTTGAGCGTTTGTAAAAAAGTGTATATATTTCTTTTCTTACAGTAAATGCTTTAGAAATAACAGAAATGTTTGCTATGTCTTTTACATGGAGAATAATCTAACCAGGAAAAAACACTAAATGGTCTTAATGCTAGCTAATATAAATCTAAAGAAATTACTAGacaataaatgttattttttttcttcgAACAAA

Function

GO: NA

KEGG:

id description
K04497 GRO, TLE; groucho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539587 lncRNA downstream 20577 12019722 ~ 12019950 (-) True G474609
TU539578 lncRNA downstream 30421 12008802 ~ 12010106 (-) True G474605
TU539506 lncRNA downstream 91139 11949051 ~ 11949388 (-) True G474535
TU539556 lncRNA downstream 103980 11936283 ~ 11936547 (-) True G474583
TU539550 lncRNA downstream 112092 11928221 ~ 11928435 (-) True G474577
TU539619 lncRNA upstream 33197 12096484 ~ 12096832 (-) True G474641
TU539628 lncRNA upstream 59335 12122622 ~ 12123474 (-) True G474646
TU539631 lncRNA upstream 69067 12132354 ~ 12132629 (-) True G474649
TU539648 lncRNA upstream 218352 12281639 ~ 12282596 (-) True G474664
TU539713 lncRNA upstream 221808 12285095 ~ 12285402 (-) True G474722
XM_021605252.2 mRNA downstream 61130 11955217 ~ 11979397 (-) False LOC110525267
XM_021605259.2 mRNA downstream 61131 11955217 ~ 11979396 (-) False LOC110525267
XM_021605253.2 mRNA downstream 61132 11955217 ~ 11979395 (-) False LOC110525267
XM_021605255.2 mRNA downstream 61132 11955217 ~ 11979395 (-) False LOC110525267
XM_021605254.2 mRNA downstream 61133 11955217 ~ 11979394 (-) False LOC110525267
XM_036979416.1 mRNA upstream 39968 12103255 ~ 12139439 (-) False rasef
XM_036979417.1 mRNA upstream 42525 12105812 ~ 12139444 (-) True rasef
XM_036979415.1 mRNA upstream 76331 12139618 ~ 12157601 (-) False LOC110525271
XR_005052018.1 mRNA upstream 76331 12139618 ~ 12157601 (-) False LOC110525271
XR_005052019.1 mRNA upstream 76331 12139618 ~ 12157601 (-) True LOC110525271
TU539592 other downstream 10917 12029159 ~ 12029610 (-) True G474614
TU539498 other downstream 83990 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 297769 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 438530 11601515 ~ 11601997 (-) True G473930
TU538397 other downstream 656081 11379527 ~ 11384446 (-) True LOC110525252
TU539726 other upstream 361174 12424461 ~ 12425235 (-) True LOC110525279
TU540491 other upstream 888965 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 966098 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 1134028 13197315 ~ 13198012 (-) True G475573
TU541500 other upstream 1968128 14031415 ~ 14087681 (-) False fam172a

Expression Profile