RNA id: XM_021605286.2


Basic Information

Item Value
RNA id XM_021605286.2
length 3747
RNA type mRNA
GC content 0.50
exon number 12
gene id rtkn
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12589060 ~ 12703826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTAAGCGAGACACCGCCCGTAGAGGTCTGAACTGGGATAGTGAAAAAGTTACGTTGCGCACCACAGCGGTGTCACACAATAGTGGGCACACCAGGGAATTTATAACAGTCTTGGAAAGATGCTGGAACGGAAGGAGTCTGTAAACGTTAATCTATGAATAGTTTGTTCTTTGCGGTTGAGAAATAATTGTAAGACTGAGTTGACATAATTGTGTCCTTTCGATAAATGTTGCAGTAGTTGCGCACCTGGATGAGCTACATTGAAAAGGATCTTTACACTAGCGCTCTACCAATTCGACGTTTCAAACTGCAAGGTCATTTTGATTAGCACCAGAAGTTTGCAATGTTTTGCCGAAATCAAACAACAAGAGCCACGATTGCCCGGGGTTCAGCCCTTGAAATGGAGATACGGCGAGGAAAATTCAGACGAAGTGTTTTGTTGGACACTTTACAGGACAGTAACATCCAGAAGAAAATAGACCATGAGATCCGGATGCGTGACGGGGCCTGTAAGCTGCTGGCTGCGTGCTCCCAGAGAGAACAGGCCCTGGAGGCCTCCAAGAGCCTGCTCACCTGCAACACCCGCATCATGGCCTACATGTCGGAGCTGCAGAGGATGAAGGAGGCCCAGGTCATGCAGAGGGTTGCACTAAGGTCATCGGACGCAGGGCCCACGGACGACAGACTACCCTGTAAAGGAAAGGTGGCCATCTCAGACCTGCGGATCCCTCTCATGTGGAAAGACACAGAGTACTTCAAGAACAAAGGAGAGCTGCATCGGTGTGCAGTGTTCTGTCTGCTCCAGGTGGGGGCGGAGATCCACGACACAGACATGGTGATAGTGGACCGGACACTCACCGACATCTGCTTTGACAACACCATAGTGTTCAGCGAGGCCAGCCCGGGATTTGAGTTGCGCGTGGAGCTGTACAGCTGCTGTTCAGAGGAGGACTACTCGACAGGGAACACGCCTCGGAAACTAGCCAGCAAACTGAGCAGCTCTCTGGGCCGTTCGGCAGGGAAGAAGCTCCGCGTCGCCATGGACCCTGGAGCCTGCAGCCCCATCAGCAACGGAGGAGGAGCCACACTGCTGCTGCCTCTGCCCACAGTGGTGGGACCGAAGTACCATCTCCTGGCCCACACCACCCTGTCACTGTCACACGTCCAGGACAGCTTCCGCACACATGACCTCAGCATCTCGGGCAACGAGGAGTGTTCACACTGGGTGCCTCTCTACGGCAGTGTGTGTTGTCGCCTGGCTGCCCAGCCTCACTGTATGACCCAACAGATGATGAGCGGCTGCTTGAAGGTCAAGCAGTTTGGAGGTGACCCTCAGAGTTGGACAAACGTCTACGGCGTCCTTAAAGGGACAAACCTTTTCTGTTATCACCGGCAAGAGGATGTAGAGGCTAACATACAGCCAGCTTTTACCATTTCCATCAATAAGACGAGAATACGGGCGTCGGAGAAGGACCTCCACAATAAGGCTCAGAGCATCTGTATCAGTAACCattatggaggagaggaggtgacacacacactctcagcagACAGTCGTGAAGACACACACCGCTGGATGGAGGCCTTCTGGCAACAGTTCTATGACATGAGCCAATGGAAGCAGTGCTGTGACGACCTAATGAAGATTGAGCTGCCATCTCCCCGGAAACCAACCCTGGTCACATCGAAACAGGGTTCTCTTTACCATGAAATGGTTATTGACACCTCTGATGACATCAGCACGGTGACGGACATCCTGGCGCGGCGGATGCAGGAGCTGGAGCTGAGGAGCCAGCTGGGGACCTCTCCTCCCTGGATGTCCCTGTTCGAGGACTCTCCTGGTTGCCCCCGCACCCACAACCGCCTCCCCCACAGCCCCCTGCGCTGCCCCCGGCCCGGCCTGCTCTCCTCAGAAGCCAGCCTGACCTCGGACAGCGACAGCCCCTGCAGCACCAGTCCTTGCTCCCGCCACAGTGGCTGGGCAgagcccctctccctctcctcccactcctcacACTTCCGCCCCCGCACCCTCTCCCTGGACGCCAAGCTCAGCACCCTCAGGGGCagggggtgtggaggggtgttaCAGTGCTCCTGTcagcccccctcctcctcctcccttgccCCCATCCCAGCCCAACGCGTCCCCCAGGCCACCCTATCCTGCTCCAACTCTACCTCCAGTAACAGCTCCAGCGAGGGCAGCCACAGCCCTGAGTTGTCAGACGGCACCCCTTTCTCACACCCCTCTTCGGCCCGTCAGAGCCTCAGGAACTTGAGGGCTAAACTGGACCCCCGGAATTGGCTCCAGAGCCAGGTATAACCCAGCTCAGACCCCCAAATCACCCAAGGCCCTGGTAAGAACTGACAGGAAGGAAGCCCCCACTTCCTCTCTGATGAAAGGGCCTTGGTATTAACTGGAATGACTTCACTCTAATGACAGGAGAATTGTCAGTGTATGGGAATGTTTAGTATCTGAGTGTGGTCATAGGGTTGTTGGTGTAACTTGTGATCTATTCAAATGGCTAGACCCACTGTCGTCGGTAATGGCAATTAAATCCTGCCAAAAAAAGTCCTCTGAAACTACTAATACACTGATTTGCTTATTGCATGATTGTGCTCGAAGTCAAGGAATGTGTTGTTTCAGATCTTTAAACTGCTCAGAAAGTGAATGAATTTTGAAAACTCAACTTAATGCAACTGTGCTCCCATTAATTTACTGTGCTActtgttactactgctactactgtgaTAACATCCGGGTCACTTCCTCTGCTGGGTTTTCAGAACTTCCCCTACATTCATGAACACATTGTAGGCCTAATACACATCAACCAATATTTGAGTTCACCAGGACATTCCGTTAAGAAACTGACTGCAATTATTTGTACCAATGTTTGGAGTAATTATAATGAATTGAAGGAAGCCAAAGGTAATGTACTACATAATCACGAGAAGCCATATTAACTCCTGTGTTACACTGCCTCATTCAAGTACCGTGTGCAAATGAACTGACTTTGAAGAGCGTAGAACCTGGGAATGTGCATACATGGGTGAAGAGTTTTGGAATCCCACAACTCTGACCTCTTAGTTTGTGGTACTACAGTCATAATGTTATGCCCGGCAAACCGGTCTCAGAATTCTGCTGCAATACCATATGAAACATTGTAATCGATCAAGTATGCAATACAGGACATATTGATCTCTAGAAaatattgtgttgtgttttttTGTCTTGAAATAGTGTAGTCTTTCACCTAATGCCAAGCAGCTGATTGTATTGGTTAAGTGACGAGGTGGGCAGGGGTAGGTGTGTCTCTGGTCTGTGCAGTAAAGCCTAACAATCCCTGTGCTTCTAATGGACTTTCTAACATGCTACTGTGTCCCAAGGGCTCGCAGCTGGCTCACTCCTTTTTACTCAGAGCAAAACAACCGTACATGCTTCAAAGTGGCATTTGTTACTGTAAAGTTTTTTTGTAATAACTTAACAAAACTAATTTTCTTATACATTATACATGATTGATTTTGTTATAAATACAGctatattgatttatttttaacaGATTGCATATCTATAACTGTGTCTAATAGATAACATTGTAATGTTAACCTTGCAAGAGTGTCTTATGTTAGCAGACTGTCTGCATGCACGTCATCCTAGGGGAGGAAGGAATAAGAACTGTCAGTCATGTTTTAAATACTGTATTAACATCACAATAATAAATGATGTATCCATTCAGAAA

Function

GO: NA

KEGG:

id description
K24024 RTKN; rhotekin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539829 lncRNA downstream 110364 12478455 ~ 12478696 (-) True G474830
TU539813 lncRNA downstream 142912 12445753 ~ 12446148 (-) True G474814
TU539806 lncRNA downstream 157017 12431250 ~ 12432043 (-) True G474807
TU539790 lncRNA downstream 194630 12393540 ~ 12394430 (-) False G474793
TU540429 lncRNA upstream 106051 12809877 ~ 12810217 (-) True G475359
TU540445 lncRNA upstream 157840 12861666 ~ 12871277 (-) False G475375
TU540446 lncRNA upstream 161751 12865577 ~ 12871277 (-) False G475375
TU540447 lncRNA upstream 161751 12865577 ~ 12871277 (-) True G475375
TU540464 lncRNA upstream 206126 12909952 ~ 12916735 (-) True G475390
XM_036979421.1 mRNA downstream 33700 12310179 ~ 12555360 (-) False LOC110525279
XM_021605277.2 mRNA downstream 317504 12258997 ~ 12271556 (-) False gkap1
XM_021605290.2 mRNA upstream 8466 12712292 ~ 12715896 (-) False smn1
XM_036979423.1 mRNA upstream 8466 12712292 ~ 12715896 (-) True smn1
XM_021605293.2 mRNA upstream 17927 12721753 ~ 12770314 (-) True si:dkey-40c11.2
XM_036979427.1 mRNA upstream 88844 12792670 ~ 12815018 (-) False rhobtb4
XM_036979424.1 mRNA upstream 88844 12792670 ~ 12824383 (-) False rhobtb4
TU539726 other downstream 163825 12424461 ~ 12425235 (-) True LOC110525279
TU539592 other downstream 559450 12029159 ~ 12029610 (-) True G474614
TU539498 other downstream 632523 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 846302 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 987063 11601515 ~ 11601997 (-) True G473930
TU540491 other upstream 248426 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 325559 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 493489 13197315 ~ 13198012 (-) True G475573
TU541500 other upstream 1327589 14031415 ~ 14087681 (-) False fam172a
TU542805 other upstream 2250267 14954093 ~ 14956050 (-) True G477528

Expression Profile