RNA id: TCONS_00033789


Basic Information

Item Value
RNA id TCONS_00033789
length 2488
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id XLOC_016230
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14002395 ~ 14004942 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTGGCCCAGGGGGGCTTGCCCTTTCACCTCAATAGGtttttttggcacttttttgagtTTTTCCAACTCTATCTGATGGATCAAGAAAAAACATCCCACCTGTAACTTATTCGAACAGGGCTAGGTAGGCTGTCCGTGGACACCCCTGTAAAAGGTCACCATTCACAGCAGGAACAGTTTTGGGGGTCATTAGGGGGAGTAGAGGGGTCAGGAAGCCCCACCCAGCAGTTTTTTCCACGTCAGAGCTCACCAAAAGGCTTTTGTGGCCTAAAAAAGCACTGTCCACGAACAGCCTATCTGGGCCCTTTCAAATAAGTTACACGTGGGACCTTCTTGTTTAAACAGTCAAAGGGACCTTTATTTTGGCGCAAAACGGTGGGGGCTTCGACTACGGTTTCGTCAAGGCCCCCTGCACGACCTATTCAAATTTCGTACGCCTCGGTGCAGGAGAAGCActtgaaaaaaaatcagaaagaAATATTTAGTGAAAATTATTGAatccgcccctcccccgcccagCCAATTAAGCATTTGCAAAGGACCTGCGGGCCCCAAACTTTCAGGATCTTTTAAGGGACCCCTGAGGGTCAGACCATATCAATTCGGAGCCGTTTCGGGCCACGGGGGCCATTCGGCAGGGCGTCCACGAACCACCtataaaatgaatggaataaGTTACACGTGTCATGGGCCCTGGATCGGCCCCCGAGGGTCCGAGGGGCTCCAAACTTGGTCTGCTGGTAGCCTAGGGGCCCCCAAACACCATACTGAGAGCACAAGTGCCTCGCTCGAACGCAACTCTTAATTGGCGAGGCAGAGCAAATCTCTCACCCAGGCCTCTTTCACCTATGCACTCTAAGTCTGTCTCATGAATGACTTTGCATGTTTGAGGTGAACTTTGCACCCTCAAAGGTTAGGGGTCATTTGGGTAGTTAGGAGGGGTCAGGGACCCCGTCCAACAGTGTCTGTCAAGTCAGAGCTCACCAAACGGCTTCTGTGGCCTAAAAAAGCACTgtccacaaacagcctatctgggCCCATTCAAATAAGTTACACGTGGGACTTGCAGTTTGAGTGGTCAAAGGGACCTTTATTTTGGCGCAAAACGGTGGGGGCTTCGACTACAGTTTCGTCAAGGCCCCCTGCACCACGTATTCAAATTTCGTACCCCTCGGTGCAGGGGAAGCActtgaaaaaaaatcagaaagaAATATTCAGTGAAAATTATTGAatccgcccctcccccgcccagCCAATTAAGCACTTGCAAAGGTCCTGCGGGCCCCAAACTTTGCGGATCGTTTGAGGGGCCCCTGAGGGTCAGACCATATCAATTCGGAGTCGTTTCGGACCACGGGGGCCAATTCGGGGGGCGTCCATGAAACACCTACCAAATGAATGGAATAAGTTACACGTGTCAGCGGCCGCCGTTCGGCCACCGGGGACCCGAGGGGCCCCAAATTCGGCACAAAGTTGCGTCACAAAGCCCTCTGTCGCATACCGAGAGGGCTAGCTCGAGGGACACCCTGAAATTTTTTATGGATTTTTCGTATGTCCCTCTGTCTCACATAGGACTCTATGGGATGAGGCCTAAAAGGGTGGTTTTGTTGGCCAGGCCTAAAAAGTTCAGAAAGCAGCTAGGGCCACGGAACTTGGGGACCTGGCTGGGGGGCCGGCGGCGGTACTCTGTGCCAAATTTGGGGGTCCTGCGACCTTTTGACTTCTCGGGAGCCATCGTCCCACGTGCAACTTATTCAATGTAAAGTCCGTAGGTGGTTCGCGGTCATGGGGGGCTTTTTTGAGCAAATTGGACCGTGTGACTGTGGAACGTTGGTGGCGGCCCCGGGGCCCCGTGACATAACATATATGTCAGTTTGGGGCCAATCGGGCGCCGTCCACGAAACACCTCTGAAAATGAATGAGATAAGTTGCACGTGGGACGTCCAGCCGTTTGGCCCCTAAGGGACCGTTCGGCCCCAGACTTGAAGTTTCGTTACTCTCTGGGGGCCGAGAAGACTACTGCGGCCTTTCTATGGCATCTTGGAAACAATTTTTTTCCCTGTGACTCAAAACGAGTGCTCGTTAGCACAGAGGGCACCTGGCGGGCATGTCCAGGCGGTTCCCGGGCACGACGGTCACTTTGTGCACGATGATGAAAAATAGGTGTCTGGGGTCATTAAAGGCACTCTACGGACAATGAGGGAGAAGAGGGTAAAAAACAGGCAGTCGGGGTATGGGCGGGCATTTTGGGGGTCAAAGGTCAGTTTTTGCAAAATAGGCAGTCAGGGGGATCAATGGGCACTTTTTGGACAATGGGCAGTCAGGGGGACCAATAGGCACTCTGCTGACAATGAGGATGATGAAGGTGAAGAATAGGCAGTCAGGGGGATCAATAGGCTCTCAGCGGAcagtgaggaggaggagggtgaagAATAGGCAGTCAGGGGGATCAATAGGCTCTCAGCGGACAgtgaggaagaggaggg

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0060842 arterial endothelial cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033353 lncRNA downstream 124874 13875695 ~ 13877521 (-) True XLOC_016228
TCONS_00032006 lncRNA downstream 215737 13783393 ~ 13786658 (-) False XLOC_016227
TCONS_00032008 lncRNA downstream 215786 13784341 ~ 13786609 (-) False XLOC_016227
TCONS_00033788 lncRNA downstream 215795 13783393 ~ 13786600 (-) False XLOC_016227
TCONS_00032009 lncRNA downstream 215795 13784395 ~ 13786600 (-) False XLOC_016227
TCONS_00032013 lncRNA upstream 2996 14007938 ~ 14009528 (-) True XLOC_016231
TCONS_00032014 lncRNA upstream 4688 14009630 ~ 14010658 (-) True XLOC_016232
TCONS_00032015 lncRNA upstream 17014 14021956 ~ 14029161 (-) True XLOC_016233
TCONS_00032018 lncRNA upstream 266774 14271716 ~ 14272075 (-) True XLOC_016234
TCONS_00032023 lncRNA upstream 389178 14394120 ~ 14426667 (-) True XLOC_016236
TCONS_00032012 mRNA downstream 115553 13885155 ~ 13886842 (-) True XLOC_016229
TCONS_00032004 mRNA downstream 310561 13688624 ~ 13691834 (-) True XLOC_016226
TCONS_00032003 mRNA downstream 619669 13376099 ~ 13382726 (-) True XLOC_016223
TCONS_00032001 mRNA downstream 668404 13257124 ~ 13333991 (-) False XLOC_016222
TCONS_00032002 mRNA downstream 668463 13298051 ~ 13333932 (-) True XLOC_016222
TCONS_00032016 mRNA upstream 202617 14207559 ~ 14271874 (-) False XLOC_016234
TCONS_00032017 mRNA upstream 203216 14208158 ~ 14272083 (-) False XLOC_016234
TCONS_00032019 mRNA upstream 271697 14276639 ~ 14390627 (-) False XLOC_016235
TCONS_00032020 mRNA upstream 273899 14278841 ~ 14387335 (-) False XLOC_016235
TCONS_00032022 mRNA upstream 273956 14278898 ~ 14387335 (-) False XLOC_016235
TCONS_00031998 other downstream 747598 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 1777856 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 2339472 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 3097216 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 4254964 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00032033 other upstream 989451 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 1023704 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 1097161 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 2503882 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 2610998 16615940 ~ 16616055 (-) True XLOC_016267

Expression Profile

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