RNA id: XM_036979778.1


Basic Information

Item Value
RNA id XM_036979778.1
length 3318
RNA type mRNA
GC content 0.41
exon number 7
gene id ube2d4
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28455590 ~ 28467865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGTCAGCTGTCCAATGCATTTCTCGTCTCGCGATATTCCGGAACTCCTCTCCAGCAgcagtggaaggagagaggggGAACTGACAGATTTGCAGAGGGATCCGCCTGCACAGTGCTCAGCGGGACCAGTTGGAGATGATTTGTTTCACTGGCAGGCGACAATAATGGGTCCGAATGACAGTCCTTATCAGGGAGGGGTGTTCTTTTTGACTATACACTTCCCTACAGATTACCCCTTCAAACCACCaaagGTTGCGTTCACGACAAAGATCTACCACCCCAATATCAACAGTAATGGAAGCATTTGTCTGGATATATTGAGATCTCAATGGTCGCCTGCACTCACTGTATCAAAAGTTCTCTTGTCAATCTGCTCTCTGCTTTGCGATCCGAACCCAGATGACCCTCTTGTACCAGAGATTGCACACACCTACAAAGCTGACAGGGAAAAGTACAACAGACTAGCAAGAGAATGGACACAGAAGTATGCAATGTGAGAATGCCTGTGAAATGAAAACACTAAAAGAAGAAACACATGTTTAATATTAACACAAGGCAAACGAACAAGAGGGGAAACATAACTACACACTCTGGTTGGAGAAGGAAGCGATAAAATAAGGGACAGTGCAACCTGGCTGCTAAGTGCCGAGCTGCTGCCATGTGCCATTCTTCATGACTTGTATGGATCAGCTGAGCAAGGCCTAAGGGACTCCTGAAAGCACTCCCTTATGGAATACTGGAACCTCCCCATAGTCCAGACCACACCCTGACTTTAACTATTACTACTTCTATTGTGACTATTATTATCAGTGTTACTATTCATATTCTTATGATCActtgttattataatgatatcaTTGTGTTATTCTACTGAATGCTGAAACATTGGGTTTTGAATTTGGAGGGGACTAGTTAGCAGCTTGGTTCGCACTCCTTTCAAAGGTACTTTCTTTGCCCCTCTGAATGTCTTGTATTACTGTATGTTTATGTATTCCGTGGCCTTGCTGTATTATTGTAACAACCTCCTCTCAGACGTTAGAAGTGCAATTGAGTTGGAGTGCTCAGCACATAAAGGTGCATGGCTATATGCAGCAGCGTGGTTCAATGGCTCACTAAGACTCTGGAGATGGTTCTACCCAAACTCTCACACCCGGACATAATGTGAGACGATTCAGACAGTCATTCTGTATCCCCCTGAGCCAATTAATTTTATCCGTCAATGTATTTGGAAATGTCCCAAATGCAGTGACAGGTGGTCCTTGGAGAGGTGCTATCAAGGTGAGCTGACCTGGGTTGGACTGGCATTTGTGCTCATGGGCAAGAGACCAGGGAGAAAGTTCTGGAACCTCTACCACGTTTCTCACCTGTGTCGTCTATGTCCCTGCTTCTTGTCCTAGATCCATCCAGGGCTAGCATCTTACTTCATAAAATCCTACTGTAAGGTAGCACTTAAACCCTGGTAAAGCTCATCTCTTGAGTTTAACTACTCCCAGCCATACAGTTGAGTACACGCATAGCGTAACAGAATGTAAACTTGTGAGATTGGGATGGTTCATGAGGCTGGCGTTAGTGCAACCCTGTAAATACAGTAGCTCAGGTATATATTGAACTCACCTGTCTGAAAGGGCACTGTAGTGACCTGTGATGTGATGAAAATGACCAGATCTGTGTTGCACACTGACATGCTGCTTTAATCCAGAAGTTGTCTTTGGAGACTTTATCTGACATGGGTCATTCATTAGCTTTCCCTACTCAACTTCTCGCCGTTATCACAGATTGTTTTACTGTACAACACAATGATGTGAATGTTTTCAAACTGTTTTTGTTCATACATGCTATTGCTTTGAATATGCCATTGGTTAAAACTGGAGTCATTTTTAATTTAGATGGGAGCTTGAAAATACGTTCTTTAATGACAACTGTTGCAGATCTATGAATGAACATGTAGTTTTTTGTTCAAGTGAGTAACTTTTTCATCTTTTGTTTATTGTGAAGTTTCATTAGGTGTttcacatgtttcccatgccttTTACATCTTAACATGAGCTGTAACCTGGGTCATGCCAGCTGCATATTTGTTTTAGCACATGTCTTGAGATTTTGTTCTTATCATTGGAACTTTACTTTCTCTTTATTTTTAGAGGGTCCACAATAGTGCACATAGGCAATACATTTGTAACCTAGTATTCTGCAAGCTTGATTGTAGTTTTTTTTGTCACTAAAATGACCACCGTTGTGATTAATCTTGCATTAGTAATATCACATTTGAAGTAAACATAATCCAGTGGAGGTGCTGGACTAGTTAGACTGCATCTGTCTTGAGCTATAAATTGTCTGTTGCCATGGAAAGGGAATAAAAAGTGTGGGGGGGGGATATGAGAAATTTGGTCATCGAAACGCTTAATGGATTTAGTGAAAGATCATTTAGGCTGATTGGGGTGGAAAAGAGGTTGTACTCTAGTCTACACTATACTGTAGCCTGGTTTTGATTTAGGAGCCCGATGCATACTGTCATTATGAATTACATTTAGAATTGGTCATGAGGCTATGATTTTGACACACTGCTTTTTCACAATTGTTCTACAATTTAGCAGCAACGAATTGAATATCCACTGACTACAGTCAATCATCTGGCAGTCAAACCATTTCTTAAAAAGACTGAGGCAGTGAGTAATGCCACTGGACAAAACGTATTTCTTCAGCTTGCTTGATTTTGCGCCATATATGGCTTTGTTTGGTTATTTAGTTTTGTAATCTGTCTTCCAGTTGTCCGTTTTGTACGCAGTCAGCCTCAATCCATCAAATGTTTCTTTCAGTATGACATCCTTGTTTGATCCAAAGAGATACAAACTGAATGATCTCATTGGTCCAATGGGTTCTTAATGGAGGTCATGATAGGCAGCTTGGCATGCTTTGCACTCTGGAGAACATTTTCACAACCATTTGTCAGATATCAGGGATTTCTTTACAGTTCATTTGCCTGACACCTCTGACAAAATCTTAGCCTTAACCATCATTTTGTGTATAGATACTGTAAATTGCTATCAGGGCTAGTTTCCCCTAAAGGGAAATCAATTTAATTTTATCACTAGAGACTTGCAATTGATATGTAAATGGGACAACTAATTTTTTTAATGTACAGCCTTGCTAACTTGAAATTCAGGACCAGCCTTCATAAATAAATGCATCTCGATTTTCTAGGTATGTCATTAAGACTTCCCATCCCCATAACAAATTATCTCCCCTTGCATACACACATGACAGAAAATAACAATTGGGTtgtcaatttaaaaaataaaactcctttttgttttatg

Function

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560153 lncRNA downstream 3803 28451490 ~ 28451787 (-) True G492994
TU560041 lncRNA downstream 20423 28430078 ~ 28435167 (-) True dbnlb
TU560145 lncRNA downstream 29621 28425764 ~ 28425969 (-) True G492986
TU560141 lncRNA downstream 46311 28409065 ~ 28409279 (-) True G492982
TU560138 lncRNA downstream 49266 28406044 ~ 28406324 (-) True G492979
TU560160 lncRNA upstream 2123 28469988 ~ 28470245 (-) True G493001
TU560206 lncRNA upstream 47050 28514915 ~ 28515918 (-) True G493040
TU560226 lncRNA upstream 71711 28539576 ~ 28539825 (-) True G493053
TU560241 lncRNA upstream 96514 28564379 ~ 28565133 (-) True G493062
TU560201 lncRNA upstream 97335 28565200 ~ 28567909 (-) True G493036
XM_021606013.2 mRNA downstream 7407 28432359 ~ 28448183 (-) False dbnlb
XM_021606017.2 mRNA downstream 7408 28432359 ~ 28448182 (-) False dbnlb
XM_021606015.2 mRNA downstream 7409 28432359 ~ 28448181 (-) False dbnlb
XM_021606011.2 mRNA downstream 30365 28414737 ~ 28425225 (-) True arid5a
XM_021606012.2 mRNA downstream 33976 28414737 ~ 28421614 (-) False arid5a
XM_036979787.1 mRNA upstream 84399 28552264 ~ 28554391 (-) False zgc:153044
XM_021606020.2 mRNA upstream 84399 28552264 ~ 28555593 (-) False zgc:153044
XM_036979786.1 mRNA upstream 84399 28552264 ~ 28556013 (-) True zgc:153044
XM_021606021.2 mRNA upstream 521542 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA upstream 521542 28989407 ~ 29010716 (-) False LOC110525678
TU559292 other downstream 620288 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 718612 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1211397 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1588432 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1903963 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 943350 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1010790 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1034388 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1207458 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2058821 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile