RNA id: XM_021606271.2


Basic Information

Item Value
RNA id XM_021606271.2
length 3500
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110525827
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33800282 ~ 33877105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATGTGTCCAGTCAACCCCGTGCCTATCTGTAGACTACATAATACACACTCTTTCTGTATCTACAGACATTGCTGTCTGACAGCCCCAAACACTGGCGCAGGAGACTACATGAATAGTTATTTTCTACCTACTAAGAACTGGACCAACACACATCTAACGCTCATTTCGGCGTCATTTGAAGGTTGTTGTTCGGGTTTAACCTACCTTTGGCTGTATCACCCCTAACCAACCCTAACCTCACCAGCACCGCCACGGGGACTTTACCATAACCCTGAAGGGAAACGGGTCCTGCCGGTGTTCCTTCCCCAGGACAGtagatgACACAGTCCTGGACCATGTAAGGGAGCTGAAGGAGCAATCTGCAGTGTTTCTACCGGAGAGAGCGACGGGGAGagtgagggaagaggaggagcgaGGAATGGGCATGGGGAAGAATATCACCTCTAAGtcgatggagggagaaggggcgaAGTATGAGGAGGAGAACAAACACAGAGCAGACTTCTACCCCATTCCGGTGGTGGTTAACGGAGTGGGACAGGCCGCTGGAGAGCAGGACACTGAAGACACTGAGCTGATGGCCGTCTACACTGAAGAGAACCAGGGAGGAGAGAAAaGTTCCATGTCGGAGACTTTGGACAGTGCAGACAGTATGGACGCCAGGAGAATGGACATGATCTACACCATTGAAGACACTCCTCCCTGGTACCTGTGTATATTCCTGGGCTTACAGCACTACCTGACATGTTTCAGTGGTACCATTGCGGTGCCATTCCTGCTAGCTGAAGCCATGTGTGTAGGGTTTGACCAGTGGGCTACCAGTCAGCTCATAGGAACTATCTTCTTCTGTGTGGGAATCACCACCCTGCTACAGACGACACTGggctgcagACTTCCTCTGTTCCAGGCAAGTGCCTTTGCCTTCCTGGCTCCCGCCAGAGCAATCCTGTCACTAGACAAGTGGAAGTGCAACGCTACAGTGGTTCCTTCCATGTTCAACGAGACTGAGCTGCTCAACACTGAACACATCTGGCATCCCCGGATacgagagATCCAGGGGGCTATCATTGTGTCGTCTCTGATAGAGGTGTGTATTGGCTTCCTGGGGCTCCCCGGGCTCTTGTTGAAATACATCGGGCCCCTAACTATCACCCCGACTGTGGCTCTCATCGGCCTGTCTGGCTTCCAGGCTgcaggggagagagcagggaaacACTGGGGCATCGCCATGCTgaCTATATTCCTGGTGTTGTTGTTCTCTCAGTATGCGAGGAACGTACAGCTTCCTCTGCCCATCTACAAGGCTAAGAAAGGATGGACCTCTTATAGATTACAGCTCTTCAAGATGTTCCCTATCATCATGGCCATCCTGGTGTCATGGCTGATTTGTTTTATCTTTACCGTAACCAATGTTTTCCCACCGGAGAAAGACAAGTACGGTTACTACGCCCGCACAGACGCACGCCAGGGAATACTGGCAGCCGCACCCTGGTTCAAGATCCCCTACCCTTTTCAGTGGGGTGTTCCTACGGTGACAGCGGCGGGGGTGATTGGTATGTTCAGTGCCGTGGTCGCCAGCatcattgagtcaattggagactACTACGCCTGTGCCCGCCTCTCctgtgcccccccaccccccattcaCGCCATCAACAGGGGTATATTTATGGAAGGTCTCTCCTGCGTGTTGGATGGGCTGATGGGGACAGGAAACGGCTCTACTTCCTCCAGTCCTAATATAGGCGTGCTAGGCATCACTAAGGTGGGCAGCCGGCGTGTGATCCAATACGGTGCTGCTATGATGCTACTGCTAGGGCTGGTGGGTAAATTCAGCGCATTGTTCGCCTCCCTGCCTGACCCTGTCCTGGGGGCGCTGTTCTGTACCCTGTTTGGGATGATTACAGCTGTGGGACTGTCCAACCTGCAGTTTGTAGACCTCAACTCTTCCAGGAACCTTTTTGTTCTGGGCTTCTCCATTTTCTTTGGCCTGGTGCTGCCCAGCTACCTCAAACAGAACCCTCTGGTCACTGGTATAGTGTCGATTGACCAGGTGTTGAACGTCCTCCTGACCACAGCCATGTTCGTAGGGGGGTCAGTGGCATTTGTGCTGGACAACACTATCCCTGGTACGCCAGAGGAGCGAGGGATCAGGAAGTTGAAGCGTGGGTCGGGACCCAGTACTGCGGAGCTGGAGGGGATGAGAACCTACGACCTCCCGTTCGGCATGGACTTCCTGCGCCGCCACACCGTCTTCCAGTACTTCCCCATCAGCCCCACCTTCAGCGGCTACCAGTGGGGCGCGATCCGCAAGGCCTGCAGACTTAGGGGGGGACGGGGTGGGGTAGGGAAGGCAGCAGAGATGGAGGGAATCACAGATCCAGGGGAGAGCGGGGTATAGCAGACTGGTAGAACCGGgctggagggaagagagatggagtttGGTACCATGGAaggaagggaggggtggaggtTTTTGGGTAGCGTCAGTGCAGTGTGACATGCTCAACCCTGtcttgtatgtatgtgtgtctgtataaCACTGTCTATGGCCTATTCATGCTGTTGTTAGCATGTTATAACCAGTGTCATGAGCGTGTAATAACAGATGTCCTTATAGGGAACGTTTCAGATGGAGTTGCAACGTGCTCTTGTCTCTGCCTAGTATGTGAGTGAAAGAGCATAGGAATGCCTTAGACAGCCCATTATTGAGGTCCCTCTCTTCCCATTGCACTATTTCTTCTAGATCTTCAGTTAACACTTATTTTCTCAGTTAACCTGTCTACATCAGTCAATCTGTCTACATACATTCCAAGGGGAATGGTAAGAAAAGGTTTGTTCTCTGCTGTTTAACCAAAATACTCTGATGTATTACACTCCCAgtggcctctgtgtgtgtgcgtgcgtgtgtgtatgcccACCCATGACATTGTGATGGGGTTGAGTGTGTCACTTGCGCTGGCACATTTCCTGTTTccggacagagacagacagacagacagacagatggacggacaGTATCTCGTTTACGGCAAAAGTTTAAAGCTCAATGATTGACACCTTACAGACCCATTGAGAATCAGACGCAGCTGGTCAGTCAGCCCTGTTTAGCAAACCTACACTTCCCACGGTGGTTATGGGAAATGTAGTCTCCTGTTGAAAGGGGATTGGATGGAATTGAGGCTTTATGAAAATTCACATTCAACTAATAATTGGCCTGCATacaaaatgtacacacacacacacacacacgcacactaccaAACACAAGCAAGGCAAGGTCATGCAGATACTGTTGATGAAAGTGGCTTGTCAAGTGGTAGACCTTAGCCATGCAAAGTGATTGTGGTGTTCGTTTTACATTATTATAGTTAATGCACATTTTGTTTACTGGAACCTGCCCCTCTATTTGGTTTATATTACCCGTTTAAGTCAAACACACAATtagggctgttatggtgaccgCATTATCACAACACCGGCAGTCAcaagtcatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566659 lncRNA downstream 1475 33793771 ~ 33798807 (-) True G498746
TU566702 lncRNA downstream 46397 33753556 ~ 33753885 (-) True G498787
TU566504 lncRNA downstream 49294 33750606 ~ 33750988 (-) True G498619
TU566671 lncRNA downstream 55574 33699173 ~ 33744708 (-) True G498756
TU566551 lncRNA downstream 235034 33548283 ~ 33565248 (-) True G498649
TU566751 lncRNA upstream 74964 33952069 ~ 33952604 (-) True G498833
TU566748 lncRNA upstream 93738 33970843 ~ 33973777 (-) True G498830
TU566799 lncRNA upstream 103819 33980924 ~ 33981134 (-) True G498880
TU566838 lncRNA upstream 140831 34017936 ~ 34018177 (-) True G498918
TU566843 lncRNA upstream 142989 34020094 ~ 34020379 (-) True G498923
XM_021606267.2 mRNA downstream 7759 33778209 ~ 33792523 (-) True LOC110525825
XM_021606266.2 mRNA downstream 7760 33778209 ~ 33792522 (-) False LOC110525825
XM_021606269.2 mRNA downstream 22173 33774059 ~ 33778109 (-) True LOC110525826
XM_021606262.2 mRNA downstream 70061 33724618 ~ 33730221 (-) True si:ch211-127m7.2
XR_005052409.1 mRNA downstream 207187 33589856 ~ 33593095 (-) True LOC118965076
XM_021606276.2 mRNA upstream 5539 33882644 ~ 33890089 (-) False kcnip3a
XM_021606277.2 mRNA upstream 5539 33882644 ~ 33894758 (-) False kcnip3a
XM_036979968.1 mRNA upstream 5539 33882644 ~ 33896662 (-) False kcnip3a
XM_021606274.2 mRNA upstream 5539 33882644 ~ 33927045 (-) False kcnip3a
XM_036979966.1 mRNA upstream 5539 33882644 ~ 33927045 (-) True kcnip3a
TU566347 other downstream 463502 33332650 ~ 33336780 (-) True LOC110525812
TU566350 other downstream 469778 33327507 ~ 33330504 (-) True G498484
TU565305 other downstream 1117435 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 1907633 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 2128355 31670978 ~ 31671927 (-) True G496777
TU566881 other upstream 163254 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 1888261 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 2630951 36508056 ~ 36517268 (-) True hk2
TU570775 other upstream 3173598 37050703 ~ 37064989 (-) True vamp8
TU571292 other upstream 3362739 37239844 ~ 37240937 (-) True G503064

Expression Profile