RNA id: XM_021606529.2


Basic Information

Item Value
RNA id XM_021606529.2
length 1800
RNA type mRNA
GC content 0.47
exon number 7
gene id fbxo4
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41562084 ~ 41565993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCAACAACAAGGAAGTGGGCGAACtaccaactacaagaaacgtcagCTTCGTTGTCAACTTCACTTTTCGCAGTAGTTAGCACCCTATTTGAGCTTTTATAAATGTTTAGCACATAGAGGACAGCGCAGACGCATTATCATTCTTACCAAATCAAAAGCAAGATGTCAGGGAGAAGTCAGAGCGACGAATCTGTAGTTATACGAAGTCTCAGACATTTCCGAGAGAAGTACTTCAATGCAAGGAAAAACGTCAGTGATCAGGTGCATGCAGCAGAAGTCCCCAGTGAAGATGCACCGCCGGGCTTTTTGGACTGTTTACCCGTGGACCTACAGTTCCTGATCATGACCCTGCTGTCTCCTGTGGACCTCTGTCGTCTGGGGGCCACTAGTAGCTACTGGAGGGCTATGGTCAGAGACCCCTTACTATGGAGATACTTTCTGGTCAGGGACATGCCTAAATGGCCCTCCATCAACCATGTGACCATGCCCCGGTTAGAGGCCTTACACACCCCTCTGTGTgtgggggagaaggagatggaggagccAGGTCATGACTTCATGACAGATTATCTAAAGGGCTACCCAGCCTGCAGACAGCAATGGTTTCCCCAGAGGCCGCCATACAGCGTTGTGACTTCCTTCCTCCAGTCGCTGGTGCCCACCGCCACTGAGCCGCGCTACGCCATGTTTGGCCCCGGCATGGAACAGCTGGATGTCTCCATGGTGACCAAGCTCATGCACACCCCAGATGTGCTCCCTGTAGCAGGGATACCCCAGAGACAGATCAATGGTATTGGATCTGGGATTAGTTACGTGTACAAAAACCAGCACAAATTCAACATTCTGACTCTCTACTCAACCAACAGggcagagagggagagagcccgCATGGAACAGCAGAGTGTCAGCAACAAACTCTTCATCCAGGAGGGAAGGGACCAATCAGGACACCCACATTTTAGCCCCACCCCTCAGGTCCAGGAAGTGTGTCAGGCGGTGGATGGGTTCATCTATGTGGCCAATGCAGAGCCAGGAAGAGGTGATGATGGGGAGGTGGAGTGGGCTCAGATCCAGGCGTTGGTGGACCCTGCCTTAGGCTCATCCTCCAGACCCCTCCTGGTCCTGTCCTGTGTgtccagagaggaaccagaccagatcagaaCCACCAGCTCCAATAGTACCAGAACCCCCTGTGTGGATATGGCTCAGAGACTCTGCCTGCCCATGCTGCCCAACCCCTGGATGGTTCAGGACACAGTAGCAGAGTCTCTGTCTGGTGTCTTAGATGGGATCTCCTGGCTGCTGGGGTGTTCTGGTCTCAGGCTGTAACTACCTGTCCAAGGAAAAACCTTCAGGACCGAAACAACACACTAAAGAACTGGCACAAATGATTCTGAAGGAATGTTTTCCCTCTGATGTGCCTTGTTTCAATGAATCACATAAAAAAAGTTATTATTGGGTAAATACAGTGTATTGTTTTTTGCCAATAGTGGGTTGTACACAAATAAAACATACGTTTTAACTGTAGCTATGgtactgtaattaatattacaAAGATTAATGAATGGTTTTGATATTACTACTACTGTGTACTTTAGAATCATATTGAATtatattttttggtaccttttATTCAGGGAAATCATGCAGTTATTCATCTGTTTCTTTCATATAATTTATGCAATTTTATACTACGAAATGTGCATTGTTTTATTTTCTTTAATTATTCATGTGGTTATTTACCCCTCTATAAGTTGTTATAAAGGAACTGAAAATACATGCATGAGTATGTACCTCA

Function

GO: NA

KEGG:

id description
K10291 FBXO4; F-box protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576851 lncRNA downstream 397 41560765 ~ 41561687 (-) True G508141
TU576568 lncRNA downstream 21969 41521161 ~ 41540115 (-) True ghra
TU576626 lncRNA downstream 63674 41498140 ~ 41498410 (-) True G507961
TU576624 lncRNA downstream 67739 41494122 ~ 41494345 (-) True G507959
TU576622 lncRNA downstream 72052 41489749 ~ 41490032 (-) True G507957
TU576904 lncRNA upstream 79290 41645283 ~ 41689015 (-) True G508190
TU576944 lncRNA upstream 132225 41698218 ~ 41701127 (-) False G508222
TU576945 lncRNA upstream 132225 41698218 ~ 41701127 (-) False G508222
TU576948 lncRNA upstream 132225 41698218 ~ 41701127 (-) False G508222
TU576949 lncRNA upstream 132225 41698218 ~ 41701127 (-) False G508222
XM_021606524.2 mRNA downstream 21934 41474979 ~ 41540150 (-) False ghra
XM_021606520.2 mRNA downstream 102989 41431651 ~ 41459095 (-) False znf131
XM_021606517.2 mRNA downstream 122812 41431651 ~ 41439272 (-) False znf131
XM_021606518.2 mRNA downstream 122812 41431651 ~ 41439272 (-) False znf131
XM_036980127.1 mRNA downstream 123191 41431651 ~ 41438893 (-) False znf131
XM_021606531.2 mRNA upstream 58 41566051 ~ 41570657 (-) True c6h5orf51
XM_021606533.2 mRNA upstream 169110 41735103 ~ 41752960 (-) True rgs7bpa
XM_021604989.2 mRNA upstream 193486 41759479 ~ 41769211 (-) True si:dkey-250l23.4
XM_021606535.2 mRNA upstream 323866 41889859 ~ 42124064 (-) False ipo11
XM_036980135.1 mRNA upstream 323866 41889859 ~ 42124064 (-) True ipo11
TU576563 other downstream 100162 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 123070 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1019755 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1672153 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1723924 39837648 ~ 39838160 (-) True LOC110525932
TU577033 other upstream 254862 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 578104 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 806448 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 1077526 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 1510699 43076692 ~ 43077157 (-) True G509902

Expression Profile