RNA id: TU578229


Basic Information

Item Value
RNA id TU578229
length 2294
RNA type TUCP
GC content 0.44
exon number 2
gene id G509432
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42643519 ~ 42645869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTCGTTTAAAATAAATAGATGGTATGATCTGAAAGAAATAGTAAAATGAACAGGCATGGAAATTGCATACAGTAACAACAAATGGTCATCAATGCCTATACAATCTTTTAGTAAACATAAAAAACACAAACATTGAAAAGATCTATTAAAAAAATAAACCAAATGCAGCAAATTATAATCAAGTATTCTACGTATTTTTGGAGACAAGCCGTAGTAGTGAAGAAACGAGGACTTCTTAAATCGACTGCTCAGTGTTAAATCTTAGTGCTTTGTTTTAGTTCAGGAAGGGTAGTGTTTCTCTGTTGGGAGTGTACAggagttgtttaaaaaaaaaaacttaaccaTGTTCTGTTTGTTTGCAATACGTTTCAAATGTCCGTTTAAAGTCGAATTCCACTTTTTGTACTCAGTAAGTAAAGTGCACGTGCAACACTTATAGTTGTTCTTGAGGCCAACATATGGTATCTAATAATAAGCACTTGGACAGAGAAAAATGGAAAATGGTGGCAGTGTTTGTTGACACCTTTCAGGAATGTTCTTTAATGTTGGTTGGTAGGTAAATAAAATAGACCACAGTCCCACAGAGTAACCCATTATGAATATATTAAATAATGTCATTCAAACCGGTTCCAGCAGGACGCACGCACTCTTCAGAACAAGAGCATGCAGCTCTCTGGGGAAAGGGCtgcagaaggggaggggaggaagctGGGCGggtagcagggttggggtcaattcagttAATTTAGGAACGAAGCCAACATTTTAATTCCAATGGACTTGAAATGACAGTTTACtccctgaattgaaatggaatggacCCCACCCCTGGTGGGTAGTCGATCACTCGTGGCatagaagggagTGCACCTTTATACAGGACATAGTAGTGCCCAGTGAAGAGAAACACGACTAGCTCTAACTAGCTGACGTATGTCAGACAGATTCATGGATGATGAAACACACATAACATAAGCTCAATTGCTGTATAACCAACCACACTGCTCAATATAAAACAAaataacacaaaaacaaacaaaaaataagcaTCTTGACATTTTTCTACAGTACCAAAGCCTATTTATTATTCATCGTCTTCACACCCTCGTTTTAGAGGGTTAAAAGGCGAGTAGTAAAACGACCGTCATAATCCTACACACCAGATAGACAGTGCTACAACAGGCTGATAACCATTTAAAAATCGGTTGAAGTTTGAATAAATAGACAGTTGACAGTACCACTATGACGCATGAAGAAGGCCAGCAGATGGTCTGGGAGGAGCCCAGGTAACAAACAGGAGATCAAAGCAGCACATTGGACAGAAAGATAACTGGAGAGGCAAGGTTGGCGATGCTTGTCTGGTAGATAAGGTCCAGTTTGTTCGACTGCAGATTGTTTTTTTGCAGCAGAACGGTCCTTTTAAGTCCTGAAGGGACATAAGGTCCTTTCAGGTCAGATTTTGCAGTAGAGAGATTATGAACAACCCACCCCTTCCAACAAGAGCGAGAGGGGTGTTCGTAGGGTCATAACCAGTCCAATAAGAGCGATGGGGGGGGTAGTGTTGTATGGACTACTGCAGCTGAGCTCAACCATTCAGTGCCAAACCAATAAATACTTCAAGTAAAAAGAAACCCACCACATGAAAAAATGCCACATGCTTCTCTTAAGAGTCTTTAGAAAAATGAACCGAATGAATTGATCAATGGACACCCTGAACAGAATACATTGAGATCCAGACAAAGAGGACCCTCCATATTGGTTCATGCAGATGACAATCCCACTCGCAGGCCACCAGCACAGATGCATTCATCCATCCATGCCCCCACATTAGTGTGAACTGAAGGGGCCACGTGTCTGCCCATACATGTGGCCTCTCCTTCAGCTTGATAGAGGGAGTTTATTGGCAGTGGACATCAATGCAGTTTATCCAGGAGAGCAGGGTGGAATGGAACCTAGGACAACCATGGAGTGGAATGGAACCCCAGAGTTCCAAGGGCCTCCACAGATTATTTCCCGCTCTTCTTTGGCACAGTGGTTCTCTTGGCCTGCCACAGGTGGTTGTGGATGGTGATGGCGTCTATGCTGACCGACACAGTCTTGGCGGGGATGACTGTGAACTGCTTGCGGTCCGAGCTGTACTTGTAGAGCTTGTCAATCATCTTCTTGCTGATGCTCTTTGGGCCCGTGCCAGTCAGCTTGAGGATCTCCTCCGTGTCTGGGAAGAAGGAGTAGACTCCCCGGAACTGGCAGCCCCCGTCCCTGAACAGGATCATCAGGTGGTGGGCCTCAACC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578133 lncRNA downstream 68697 42573996 ~ 42574822 (-) True G509342
TU578130 lncRNA downstream 72070 42567232 ~ 42571449 (-) False G509341
TU578131 lncRNA downstream 73439 42567053 ~ 42570080 (-) False G509341
TU578132 lncRNA downstream 74099 42567232 ~ 42569420 (-) True G509341
TU578085 lncRNA downstream 196936 42446355 ~ 42446583 (-) True G509296
TU578279 lncRNA upstream 94121 42739990 ~ 42740374 (-) True G509480
TU578282 lncRNA upstream 100195 42746064 ~ 42746279 (-) True G509483
TU578286 lncRNA upstream 103653 42749522 ~ 42749918 (-) True G509487
TU578288 lncRNA upstream 107328 42753197 ~ 42753503 (-) True G509489
TU578295 lncRNA upstream 116097 42761966 ~ 42762227 (-) True G509496
XM_021606553.2 mRNA downstream 56233 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA downstream 56233 42576529 ~ 42587286 (-) False LOC110525994
XM_021606555.2 mRNA downstream 56233 42576965 ~ 42587286 (-) True LOC110525994
XM_021606552.2 mRNA downstream 94305 42539864 ~ 42549214 (-) True noxa1
XM_036981747.1 mRNA downstream 123024 42423411 ~ 42520495 (-) False LOC110525992
XM_021606563.2 mRNA upstream 9115 42654984 ~ 42729593 (-) False LOC110525997
XM_021606567.2 mRNA upstream 9115 42654984 ~ 42729593 (-) False LOC110525997
XM_021606562.2 mRNA upstream 9115 42654984 ~ 42729594 (-) False LOC110525997
XM_021606568.2 mRNA upstream 9116 42654985 ~ 42729593 (-) True LOC110525997
XM_021606569.2 mRNA upstream 120670 42766539 ~ 42788488 (-) False LOC110525998
TU577801 other downstream 240299 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 498634 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 822309 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 1181597 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 1204505 41434975 ~ 41439014 (-) True znf131
TU578716 other upstream 430823 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 476677 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 478712 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 877845 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 1300469 43946338 ~ 43948389 (-) True prodhb

Expression Profile