RNA id: XM_036981747.1


Basic Information

Item Value
RNA id XM_036981747.1
length 5148
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110525992
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42422990 ~ 42520495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAAGTGCGGCGCTTTTAAGTAACAATATGAAATATTCTTCTCCGATAGAGGAAGACCAACTACCTTGCAATTGAAGGGGACACTGAGACGAACGAGAAACAATCAGCTTTTTAATTTTGGTCTATAAAAATAATGATGACATAGGTAGGCTACAAAGATGACCAATTGCGAACAGTTTTGCTCCCAGACCACCCAGAGGAACACATTCAGGTGCCACGTAGTGCAAGAGCGCGCGCGTCTTGTCCGTATTCTTTGTTATCCAGTATAATATTCAGTTGAATaaaagttgttgttgttgtgacaaGTCTAGAAATATTCCTCTGCTGCACGAGTATTTTTGCCAACTTTCTGAAGCAATTATTTTCTCACCATCATCTACGGATCTACGGTGCACCTTCACACAAACCGGACTCTCCATAAATAGGTGAAGATCGAAGATGCGGCGGCAATGGAGAGCTGTTATTATTTGATGCTTCCGACAGGCATTATTGGAAAGATGACCATTTTCAACGCTGACTTCCTCCAAGAATCACCGTGCGGTCATGTGTTTTCGGAGCGGAGAGACTTCTATAGCAGTATCTCAAATGCATGATCTGACCATCCATGTCTGGGGTGTGCTGTTTATGGTAAAGCTGTAGCATGATGAGCAGCGATTTGGAGCGCGTTTCACTAAATTCAACGACGGCTAACTCGGGAATTGGGTCGGGTGGCCGCGCGCTGTCAGCAAACGTTCGGAAGCTGCACAACGCGCTCAACCTGCTGCTCACAGACTTCGAGAGAGAACAGTTCATACACTGTCTAAATGTGTACCATGCAAAGCGCAACGTCTTCGATTTAGTTCAAACTCTCAAAATAATCCTCAACACGCCAAACAAACGACAACTCCTCCCCATGTTGCGGTTGGTCATTCCGCGCTCAGACCAGCTGTTGTTTGACCAGTATACTTCCGAGGGCCTGTACCTTAAAACGGACCATCTACCGCAAAACAGTGGTAACAACCCTGAAAGCTCTGGAGGAGAAGTAGGCAATGCTGCAAACCACCATGTCCAAATTCCCACTGCTCACTGTATGAACCCTCATGATCTCTCTTGTTATGCATCACCAGGAGCGTGTCCCGGCAAGGATGGTTTCAGCACCACTGCTGATGGGACCGCTCCCCAGGCTTTCATCCAGGGGGAGCCTTTTGGAGAGATCCGCCAAGTGACACTGAGACGCAGAAAGAGCAATGAGGGTTTAGGGTTCAGCATCCGGGGAGGCTCCGAGCACGATGTGGGAATATATGTGTCGCTAGTAGAACCCGGATCTTTTGCTGAGAATGAGGGATTGAGGGTCGGTGATCAAATAGTGACTGTTAACGACATGCTGTTTGACAGACTCTCACACATGGAGGCAGTCAAGGTCCTGAAGGGCTGTAAGAAGCTAGCCAtgtcagtgtgttctgtgggCCGTATCCCTGGCGGTTATATCACCAACCACATCTACACCTGGGTGGACCCTCAGGGCCGCagtgtctcccctccctccgaCCTGGAGAAGCAGGAGCAGCACAGCACCCTGGGACGGCAGGACAGCCAGAGAcgtggacacacacaggagagggctgagaagaCGATCACCCTAAACTTGAACGATGGTCTCTCTCTGGGCCTGATGATCAGAGGAGGGGCAGAGTACGGCCTGGGCATATACATTACTGGAGTGGACCCAGGCTCAGCCGCAGACCACGGTGGACTCAAGGTGGGCGACCAGCTGCTGGAGGTGAATGGGCGGAGCTTCGTGGCCATCCCCCATGATGAGGCGGTGAGGATCCTGAAGACGTGTCGCCACCTGCTGGTTAGGGTGAGAGACGTTGGCCGCCTGCCCCATGCCCGCACCGTGGTGGACCAGACCAAATGGATCAGCAGCCCTAGCCCTCCCAGCCCACCGCCCATAGCAGAGAGCACCGCCAGCCCAGCTACTACACGGCCATCTTCAGCGCGGGCTACACCTGTATTAGGAAAGTCAGTGTGTCGAGGTGTGTGGCCCCCAGGTTCCCAGGTGTCTCTGGAGGAGCAGGCCTTTCTGCTGCTGACAGACCCAGAGAGGCAGACCATGGTTTACTACCTGCAGGAGTACCAGGACGGACACATCGGTCTGGAACCCCTGGCTATGGCCCTGTTTGAACTCTTCAACACCCACGCCAAGTTATCCTTGCTGTCTGAGGTGCGTACACTGGTGGCTCCCCAGGACCTGGAGGTGTATGATGGTCTGGTGCTGCACCGTGAGAGGGAGGCTCTGAAGGCCTGGCATGGAGAAACAGGAACGTTGCATCCACACAGCCACTGTGTACACACAGAGCGCTCAGCCAGCCACAGCCACTCCAACCCCACCACTCTCTGCTCTGCCAAGCATGAGTGCTCACATGGTGACAGTGTAGAGCAAGATCCAGGGGTACGCACTAATGTCCTACCTGACATTACATTGGTGAGTCTCAGACAGACTGAGGTTAAAGAAGTGCGGTCTACAGCTGAATCTCCTCCGTCCTTCAAGCCATCACTTCCCTCCGGCCATACCCAGACGAGAAACCCCAAGGAGAGGGACCCTTCCAAGCGTCCCTCATCCAGTCACTCCCAGTCTGGCCTGATCTTTACTGCCCCCACCAGGCTACACCAGGAATGTCACCACAAATCCCTCAAAGCCTTCAGCTCCTCCAACCACCAAACCTCCACCTCCCCTAGTTCTGGCCTCCATCACACCTGTCCCAACCCTGGCTACCAAAACAGCCCCAACCCTGGCACCAACCACAGTGCCAATCTAAGATCTGGTCATCAGACATCCATAAACTCTCTTCACCACACCTGCCAAAACTCCCTCCACATCTCCACCCCCACATCTGACCACCACCCCCACCAAGGCTGCCCTAGCTCTGGCCACCATACCTGCCCCGGCTCCCTTGATCACAACCCCTTGTGGTTCCCCTCTGCTCTTCCAACACAGGAGACGACCATCAAGCACCCCATCTTCAGATCCTCTTCCCATGAGAAGCCTGCTACCTCCAATAAGACTGCCTCCCCTTGTCTCTCACCGTGTCCCACCCCTGGTCTCTCCCCATGTCTGTCCCCCTGTCCCTCgccctgtccctctctcactgtcctgAAGCCGCCCCCATGTAGCCCAGACAGACCCTGCTctccctgttctccctccctcagccAGGGAGGTCAGTGTGTCATGGCAGGCGTACACAGACTGACTGCTGAGGTCAGGCCCCAGCCCCAGCAGAGAGGCGCCACATTGTCCCAACTGTCAGACAGTGGTCAGACTCTGAGTGAGGACAGTGGGGTGGACATTGCTGAGGCAGGAGGGCTGAGTAAAGACAGCAGTCCTCGGCCCAGTAAGAACCAGGCCACACAGCAGTCCCAAGTGGCCCAGGGACCTGCAGCACTGGCATCCAAACAGCAGCCTGGCTCTCCAGTGCCCACCCCTACCCTGGTACATGTGGTAAAGAATGCCAATACTCTGGGTATCGCTATAGAGGGAGGGGCAAACACACGCCAGCCGCTGCCACGCATCGTCACCATacagaAGGGGGGCTCGGCACACGGTTGTGGGCAGCTGAAGGTGGGTCAGGTGATTCTGGAAGTGAACGGTGTCTCCCTGAGGGGCCGTGAGCACCAGGACGCTGCTTGCATCATCGCTGAGGCCTACAAGTCCAAAGAGAGGGACCACATTGACTTCCTGGTCACAGAGTTCAACGCAGCCCTCCTGCAGGGCCTTTtgcagggtcgtattcattagccACCATACAGAAGAAAATGGACTAAAATAGgcagggactacctgaacttgtcaaATAAGAAATGCTTGTTCCTATTTTCCTGCAGGGGCTTTAGCAGGACTTTGCACTTTAAGgtgaaacagaaagagaaggagaaggcgAGAACGGGAGGGAGAGGTCTGAGTGTTAATATAAACAATCTATCTTAGTCTCGTCTAAGACCGTTCTCCCTTCCCACTTTTTTTGTCTGTAGATCGCAACCAGGCTTTCCATGTAGAGTTGTATTGCCAAAATGCATGACATTCTGCATTAAGAACTCCCCAATATAATCTAATAGAACCTAAGAAGAACTCACCAATATAACCTAATAGAACCTAAGAAGAACCCACCAAAGGAACCGAATGGTATTGAACTGAAATCTTGAAAATCACAGCTTATAACAACAATATCAATGCTGTGATGTCATTAGTTATGTCATTCCATTTAGCTGCTTTTCagtctccctgctctctcctctccaataGGTCTGCCATTTGTAGCAGCTCTCCCCTGGAAGTGGTTATACCAAGATGGTGCTTTGAAAATGGACAGAAATGGTATCTAATCTTAGTCGAACTATACCTTTGTGCTATCTCTAAAATACTTTCTTTGTATAATTTCTGTAATGTTTTATGAACACCCTGTATGTTGTATATAACATTGAAATGGGTAGAGGATTTGAGCTATTTATAACACTAGGTCGTCTGTATGTAAGAAGATAACATTTCTTTATGGATTTTATTAATTgacttaattttttatttataagGGCAGTTCGTTTTCTGTACTTTGTGTTCATGGTATACAGTATTGGTTAATTGGCTGTGGGGTGAATCTTGTGATTACATTAAGAATCCTTTGTCATACActtctatctatatatatatatatatatatatatatatatatatatatggaagtGTATGACATACAGTAGATAAAAGCAGAGACAATACTGAGAATTAGCAAAGGTACTTCATCTGAGCTGTAGAGCTGAATCAGAGACAGTAATGTTTCCTGGGAGAGGAAAATTAGTACATGAGCTGCTAATGCATCGTTATACAGATACATAACTTGTCAATTATAGGTAACTGACTCACTATTAGCAGAGATGGGGTGGAGGGGATGCAGCAGCAGCCATAATGCACATTGTGTGTATGGGAGAGAATATACTGTACACATCGCCaaaagtcaagttcttccacaccaatctcggcGAACCATTTCACTATCGACGTCTGTGcacagggcattgtcatgctgaaacaggaaaaggccttccccaaactgttgtcacaaatttggaagcacagaattgtcaagaatgtcattgtatgctatgacgttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578070 lncRNA downstream 3125 42419283 ~ 42420286 (-) True G509281
TU577828 lncRNA downstream 5058 42418111 ~ 42418353 (-) True G509059
TU577827 lncRNA downstream 5370 42417825 ~ 42418041 (-) True G509058
TU577804 lncRNA downstream 6334 42410327 ~ 42417077 (-) True LOC118964871
TU577803 lncRNA downstream 21181 42398976 ~ 42402230 (-) True G509034
TU578131 lncRNA upstream 46558 42567053 ~ 42570080 (-) False G509341
TU578130 lncRNA upstream 46737 42567232 ~ 42571449 (-) False G509341
TU578132 lncRNA upstream 46737 42567232 ~ 42569420 (-) True G509341
TU578133 lncRNA upstream 53501 42573996 ~ 42574822 (-) True G509342
TU578279 lncRNA upstream 219495 42739990 ~ 42740374 (-) True G509480
XR_005052110.1 mRNA downstream 10160 42404839 ~ 42413251 (-) False LOC118964871
XM_021606544.2 mRNA downstream 63019 42302921 ~ 42360392 (-) True LOC110525990
XM_021606543.2 mRNA downstream 121662 42252483 ~ 42301749 (-) True npdc1b
XM_036980138.1 mRNA downstream 181973 42146659 ~ 42241438 (-) False LOC110525987
XM_021606552.2 mRNA upstream 19369 42539864 ~ 42549214 (-) True noxa1
XM_021606553.2 mRNA upstream 56034 42576529 ~ 42587286 (-) False LOC110525994
XM_021606554.2 mRNA upstream 56034 42576529 ~ 42587286 (-) False LOC110525994
XM_021606555.2 mRNA upstream 56470 42576965 ~ 42587286 (-) True LOC110525994
XM_021606563.2 mRNA upstream 134489 42654984 ~ 42729593 (-) False LOC110525997
TU577801 other downstream 20191 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 278526 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 602201 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 961489 41421024 ~ 41461922 (-) True G507906
TU578229 other upstream 123024 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 556197 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 602051 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 604086 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 1003219 43523714 ~ 43524108 (-) True G510310

Expression Profile