RNA id: TU578279


Basic Information

Item Value
RNA id TU578279
length 385
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G509480
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42739990 ~ 42740374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taactatgatgtgggaaaccgcgaactgctcgccatccgcttagccctaggcgaatggcgacagtggttggagggggcaaccgttccttttgtcgtttggactgaccataggaaccttgagtacatccgttctgccaaacgacttaatgcgcgtcaggcgcgctgggcgctgtttttcgctcgtttcgagttcgtgatttcttatcgtccgggctctaagaacaccaagcctgatgctttatctcgtctcttcagttcttcagtagcctccactgaccccgaggggattctccctgaggggcgtgttgtcgggttgactgtctggggaattgagaggcaggtaaagcaagcactcactcaaactccgtcaccgcgcgcttgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578133 lncRNA downstream 165168 42573996 ~ 42574822 (-) True G509342
TU578130 lncRNA downstream 168541 42567232 ~ 42571449 (-) False G509341
TU578131 lncRNA downstream 169910 42567053 ~ 42570080 (-) False G509341
TU578132 lncRNA downstream 170570 42567232 ~ 42569420 (-) True G509341
TU578085 lncRNA downstream 293407 42446355 ~ 42446583 (-) True G509296
TU578282 lncRNA upstream 5690 42746064 ~ 42746279 (-) True G509483
TU578286 lncRNA upstream 9148 42749522 ~ 42749918 (-) True G509487
TU578288 lncRNA upstream 12823 42753197 ~ 42753503 (-) True G509489
TU578295 lncRNA upstream 21592 42761966 ~ 42762227 (-) True G509496
TU578297 lncRNA upstream 23980 42764354 ~ 42764679 (-) True G509498
XM_021606562.2 mRNA downstream 10396 42654984 ~ 42729594 (-) False LOC110525997
XM_021606563.2 mRNA downstream 10397 42654984 ~ 42729593 (-) False LOC110525997
XM_021606567.2 mRNA downstream 10397 42654984 ~ 42729593 (-) False LOC110525997
XM_021606568.2 mRNA downstream 10397 42654985 ~ 42729593 (-) True LOC110525997
XM_021606553.2 mRNA downstream 152704 42576529 ~ 42587286 (-) False LOC110525994
XM_021606569.2 mRNA upstream 26165 42766539 ~ 42788488 (-) False LOC110525998
XM_021606574.2 mRNA upstream 251675 42992049 ~ 42997858 (-) True zgc:101858
XM_021606575.2 mRNA upstream 265196 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA upstream 265196 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA upstream 265196 43005570 ~ 43018519 (-) False LOC110526002
TU578229 other downstream 94121 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 336770 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 595105 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 918780 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 1278068 41421024 ~ 41461922 (-) True G507906
TU578716 other upstream 336318 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 382172 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 384207 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 783340 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 1205964 43946338 ~ 43948389 (-) True prodhb

Expression Profile