RNA id: TU578716


Basic Information

Item Value
RNA id TU578716
length 466
RNA type TUCP
GC content 0.44
exon number 1
gene id G509902
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43076692 ~ 43077157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccaaccaacctctccactcactggacccttttgatcactcgactaagcatgcctctccttaatgtcaatatgtattgtccattgctgttctggttagtgtttattggcttatttcactgtagagcctctagtcctgctcactataccttatccaacctattagttccaccacccacacatgcaatgacatctcctggtttcaattatgtttctagagacaatatctctctcttcatcactcaatacctaggtttacctccactgtattcacatcctaccatacctttgtctgtacattataccttgatgctattttatcgcccccagaaacctccttttactctctgttccagacgttctagacgaccaattcttattgcttttagccgcacccttattctactcctcctatgttcctctggcgatgtagaggtgaatccaggccctgcagtgcctagctccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU578713 lncRNA downstream 2950 43072251 ~ 43073742 (-) True G509899
TU578696 lncRNA downstream 32111 43039741 ~ 43044581 (-) True G509882
TU578689 lncRNA downstream 47707 43028774 ~ 43028985 (-) True G509875
TU578679 lncRNA downstream 73248 43003173 ~ 43003444 (-) True G509865
TU578678 lncRNA downstream 73648 43002601 ~ 43003044 (-) True G509864
TU578726 lncRNA upstream 8692 43085849 ~ 43086123 (-) True G509912
TU578733 lncRNA upstream 13033 43090190 ~ 43090403 (-) True G509919
TU578749 lncRNA upstream 26610 43103767 ~ 43107120 (-) True G509933
TU578767 lncRNA upstream 46710 43123867 ~ 43124142 (-) True G509950
TU578784 lncRNA upstream 62037 43139194 ~ 43139409 (-) True G509967
XM_021606575.2 mRNA downstream 58173 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 58173 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA downstream 58173 43005570 ~ 43018519 (-) False LOC110526002
XM_036980153.1 mRNA downstream 58173 43005570 ~ 43018519 (-) True LOC110526002
XM_021606574.2 mRNA downstream 78834 42992049 ~ 42997858 (-) True zgc:101858
XM_021606577.2 mRNA upstream 612147 43689304 ~ 43813410 (-) True LOC110526003
XM_021606578.2 mRNA upstream 863633 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 863633 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 967889 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 1133693 44210850 ~ 44271697 (-) False nf2a
TU578229 other downstream 430823 42643519 ~ 42645869 (-) True G509432
TU577801 other downstream 673472 42372441 ~ 42403220 (-) False G509034
TU577652 other downstream 931807 42144097 ~ 42144885 (-) True G508891
TU577033 other downstream 1255482 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 1614770 41421024 ~ 41461922 (-) True G507906
TU578766 other upstream 45389 43122546 ~ 43123092 (-) True G509949
TU578769 other upstream 47424 43124581 ~ 43125387 (-) True G509952
TU579133 other upstream 446557 43523714 ~ 43524108 (-) True G510310
TU579749 other upstream 869181 43946338 ~ 43948389 (-) True prodhb
TU580173 other upstream 1132181 44209338 ~ 44210665 (-) False nf2a

Expression Profile