RNA id: XM_021606577.2


Basic Information

Item Value
RNA id XM_021606577.2
length 2692
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110526003
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43689304 ~ 43813410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGCATGGCAGCGCGGCCAATATACAACCATACACAGCGGTTTCTTCTCATTTCGGCCTACCTCGTTCGGATTACAGCCTGGTAGAATTGAGACAGGATATGTACCACAGTATCCATGGATTATTatttttgatttttatttttgattttgattttccAAATTCTGGAACTTTGAgctatttgtgtgtttttttgtttcttGTTTGTGCGTCCTTTTGGAAGGGTGCTCTGCGCTCCCGTGCGTTGTGTGTTGGTTGAAAGGTCCCAGTTTGGATATTACACTCTAGTTTTTGTCTTCGCTCTCACTGGCCCAAATGACTGAGCGCTGATCCAGCCTTCTATCGGCTTTAGCAGGAAAACCTCCGTCTAAAGTTAGAATATAACCGTGGCTTAGGGGGTCCGTGACTACACAGTGAACTGGATTTGCAATTATCTATCGATTGCAACCGAGAGCGGATACACAGTCTCTGGAaacagagttccctctgctggaTTTATTCAACTACTGGATTTATTCATAAATCATGAAGACCAGTCTTGTTGAGGgGGGCCGACTCCTGTTCCTTGTGTTGTGGTTAAACCTGGTGCCTCGAGGAGCAGAGGGCTGCCCGGTCaaatgtgtgtgttacagtgagcCACGGCCCACCATGGCATGCCAGCAACAAGGACTGTTCTCCATCCCCAACGAGATCCCTGTGCAGAGCCAGCGGATATTCCTCCAGAGCAACAAGCTGACCGTGGTCCGCTCCACCAGCTTCAGCTCTGTGCACAACCTCACCGTCCTCTGGATGTACTCCAACAACATCAGCCACATCGAAGCTGGGGCCTTCTATGGTCTGGAGCGGCTGGAGGAGCTGGACATTGGGGACAACAGTAACCTGAGAATCATCAGCCCCACGGCCTTCAGGGGCCTGTCCAAGCTCCACACCCTCCACCTGCACAGGTGCGGCCTGTTGGAGTTACCTGTTGGAGCGTTCCAGGGACTGTTCTCCCTGCAGTACCTTTAcctgcaggacaataacctactgGCCCTGCACGATGACACTTTCCTGGACCTGGCCAACCTCACCTATCTCTTCCTGCACAACAACAAGATCAAGACCGTATCGGACCACATGCTGCGTGGCCTCATTAACCTCGACCGCCTGTTGCTGCACCAGAACCGGGTGATCTATGTCCAACCAAGAGCATTCAGTGACCTGAGAAAACTGACCACACTGTTCCTGTTCTACAACAACCTGACCGTGCTGACTGGGGAGACCATGGACCCGCTGGGGTCCCTCCAGTACCTGCGTCTCAAcgggaaccagtgggtctgtgaCTGTCGGGCCAGGACCCTGTGGGACTGGTTCAAACGCTTCAAGGGCTCCAGCTCAGAGCTTGAGTGTAACGTCCCATTGGAGTTGTTTGGGAAGGACCTGAAACGGCTGAAGAGTGATGATCTGGAAGGGTGTGTGGAAACTCCTCAGATCCAAACCCAGCTCTTCAGCTCCAACCTGTGGTCTGGAAAATTTGCCTCCACGGAATATCCTCTGGGAAATGGAATTCCCAGGTGTTGTCTTCCAGATAATGATAAGTCCTCTATCATCTCCGAGAAAACCATCCCTGACCCCTCATCCTACAACAGCCGCCAGATCACCAACAACCCCCTCAAGGAGAAGGAGAACATATCCAAGACCAAATTCAGAGAGCAGGAGCGAACAAAAAATGAGACCACCCGGAATAAGCAGAGTCTCAACGACGGGCCTCTGGGGACTCTGTCCAACAACCTTGACCAGTCCTTAGTCCAACTGCAAGATCTGGAACCTTCTACAGCCCCAACCAGGAAGAAAAAGAAGTGCACTAAAAAACCCAAATCCGATGCACAATGTCTCAAAGGCCATGGATCTACAATGCAGGTGGAGCTAAGTTTTCTCTTCATGTCCATAATCTGGTTCTGGTTCTCTATGGTCATGTCTTAGGACATTAGGGCCTGGGATGGGATTCATGCTAAATAAACATTGTTGGGACTCACAGATTGTTATTAATGCTCATGACAATGATACAGAATCTATCTGCAGTGAtctctgacctccactaacagCCCAGAGACTGATAACACAGGAAGTCAGGTTTGGACCCATTGCCAGGGTAACAAGGACTTACGATAATAAAGAAGTTAAACAAAAAAGGATGCCTTTACAGAACATGTCTCATCTAATGTATATAACAAATCAGTGCCCAAaattgtttgttctgtatgtactgtacctTGTCTAAGCTACACCACTTTGGAGACTCTCCTTATTCCTTTTTCTGTCTCAAAAGCTTTTACTGCTGAGACAGTGACTGCTTAGACAGACcacaaaaaatgaataaaaaataacatGAATTCAGAGGGTCTGAACGAACACAAAGAACGTTTAGGGTCTGTTTgttgaaaaatagattttcacTCCCCCATTATTTATTCAAAAAGTGTTGCATTTGTCGGGTACTGTTATGTTTTTTATGTTTATAAGTAAAGACAAATGTTTATTCTCTCCCCAGTTTGAGTTATGTTTTCATCACAGTATGGGTACGGGTAGCATTGGCTAAAATAATGCTGTCTAAATGTTTCACAGAGATTGCAATGGAATCATAGATATGCATTTTATTTTACTTGTGTACAAGTATGAATATATTATGAATAAAAGTTATCCTTTCCTATA

Function

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0007411 axon guidance biological_process

KEGG:

id description
K16659 RTN4R, NGR; reticulon-4 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579145 lncRNA downstream 155115 43533913 ~ 43534189 (-) True G510322
TU579127 lncRNA downstream 169841 43519206 ~ 43519463 (-) True G510304
TU579042 lncRNA downstream 228381 43460694 ~ 43460923 (-) True G510221
TU579035 lncRNA downstream 231820 43457032 ~ 43457484 (-) True G510214
TU578983 lncRNA downstream 276331 43412758 ~ 43412973 (-) True G510162
TU579798 lncRNA upstream 185358 43998768 ~ 43999038 (-) True G510947
TU579802 lncRNA upstream 188483 44001893 ~ 44002194 (-) True G510951
TU580036 lncRNA upstream 367848 44181258 ~ 44181689 (-) True G511181
TU580045 lncRNA upstream 389726 44203136 ~ 44203395 (-) True G511189
TU580227 lncRNA upstream 468565 44281975 ~ 44282194 (-) True G511342
XM_021606575.2 mRNA downstream 670785 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 670785 43005570 ~ 43018519 (-) False LOC110526002
XM_036980152.1 mRNA downstream 670785 43005570 ~ 43018519 (-) False LOC110526002
XM_036980153.1 mRNA downstream 670785 43005570 ~ 43018519 (-) True LOC110526002
XM_021606574.2 mRNA downstream 691446 42992049 ~ 42997858 (-) True zgc:101858
XM_021606578.2 mRNA upstream 127380 43940790 ~ 43955256 (-) False prodhb
XM_036980157.1 mRNA upstream 127380 43940790 ~ 43955257 (-) False prodhb
XM_036980163.1 mRNA upstream 231636 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 397440 44210850 ~ 44271697 (-) False nf2a
XM_021606583.2 mRNA upstream 397440 44210850 ~ 44272385 (-) False nf2a
TU579133 other downstream 165196 43523714 ~ 43524108 (-) True G510310
TU578769 other downstream 563917 43124581 ~ 43125387 (-) True G509952
TU578766 other downstream 566212 43122546 ~ 43123092 (-) True G509949
TU578716 other downstream 612147 43076692 ~ 43077157 (-) True G509902
TU578229 other downstream 1043435 42643519 ~ 42645869 (-) True G509432
TU579749 other upstream 132928 43946338 ~ 43948389 (-) True prodhb
TU580173 other upstream 395928 44209338 ~ 44210665 (-) False nf2a
TU580171 other upstream 396055 44209465 ~ 44211823 (-) False nf2a
TU580172 other upstream 396055 44209465 ~ 44210665 (-) True nf2a
TU581656 other upstream 1461228 45274638 ~ 45276387 (-) True znrf3

Expression Profile