RNA id: TU579798


Basic Information

Item Value
RNA id TU579798
length 271
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G510947
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43998768 ~ 43999038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaataatggtccggGGTTGTTtatcatggttcaggctaggccccttagttccagtgaagggaaatcttaatgatacagcatacaatgacattctagatgataatgtgcttccaactttgaggcAACTGTTTGGGGAAGAAACTTTtatttttcagcatgacaatgcccccgtgtacaaagtgaggtccatacagaaatggtttgtcgagattggtgtggaagaacttgactggcctgcacagagccctaacctcgaACCCCATCgcacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU579145 lncRNA downstream 464579 43533913 ~ 43534189 (-) True G510322
TU579127 lncRNA downstream 479305 43519206 ~ 43519463 (-) True G510304
TU579042 lncRNA downstream 537845 43460694 ~ 43460923 (-) True G510221
TU579035 lncRNA downstream 541284 43457032 ~ 43457484 (-) True G510214
TU578983 lncRNA downstream 585795 43412758 ~ 43412973 (-) True G510162
TU579802 lncRNA upstream 2855 44001893 ~ 44002194 (-) True G510951
TU580036 lncRNA upstream 182220 44181258 ~ 44181689 (-) True G511181
TU580045 lncRNA upstream 204098 44203136 ~ 44203395 (-) True G511189
TU580227 lncRNA upstream 282937 44281975 ~ 44282194 (-) True G511342
TU580230 lncRNA upstream 285236 44284274 ~ 44284580 (-) True G511345
XM_036980157.1 mRNA downstream 43511 43940790 ~ 43955257 (-) False prodhb
XM_021606578.2 mRNA downstream 43512 43940790 ~ 43955256 (-) False prodhb
XM_021606577.2 mRNA downstream 185358 43689304 ~ 43813410 (-) True LOC110526003
XM_021606575.2 mRNA downstream 980249 43005570 ~ 43018519 (-) False LOC110526002
XM_036980150.1 mRNA downstream 980249 43005570 ~ 43018519 (-) False LOC110526002
XM_036980163.1 mRNA upstream 46008 44045046 ~ 44099131 (-) True LOC110526006
XM_021606584.2 mRNA upstream 211812 44210850 ~ 44271697 (-) False nf2a
XM_021606583.2 mRNA upstream 211812 44210850 ~ 44272385 (-) False nf2a
XM_036980165.1 mRNA upstream 229547 44228585 ~ 44272386 (-) False nf2a
XM_021606588.2 mRNA upstream 310856 44309894 ~ 44336939 (-) False fbxw8
TU579749 other downstream 50379 43946338 ~ 43948389 (-) True prodhb
TU579133 other downstream 474660 43523714 ~ 43524108 (-) True G510310
TU578769 other downstream 873381 43124581 ~ 43125387 (-) True G509952
TU578766 other downstream 875676 43122546 ~ 43123092 (-) True G509949
TU578716 other downstream 921611 43076692 ~ 43077157 (-) True G509902
TU580173 other upstream 210300 44209338 ~ 44210665 (-) False nf2a
TU580171 other upstream 210427 44209465 ~ 44211823 (-) False nf2a
TU580172 other upstream 210427 44209465 ~ 44210665 (-) True nf2a
TU581656 other upstream 1275600 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 2360850 46359888 ~ 46360886 (-) True apba1a

Expression Profile